1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatattgtgcacatcttgtcttacatgccttgcagtagagattgataagacaccatggaccatgcactgaagaaagttgaccgtttgttactgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGC
species | Zea mays |
transcript | GRMZM2G064988_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTGTCCTCTAGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|94479367|gb|EB708325.1|EB708325
genomic: ACCTGTCCTCT-GCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|211045986|gb|FL421700.1|FL421700
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
taagacaccatggaccatgcactgaagaaagttgaccgtttgttactgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGC
agttgac putative branch site (score: 4)
ctgtttcc putative PPT
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattgtgcacatcttgtcttacatgccttgcagtagagattgataagacaccatggaccatgcactgaagaaagttgaccgtttgttactgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG