1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatattgtgcacatcttgtcttacatgccttgcagtagagattgataagacaccatggaccatgcactgaagaaagttgaccgtttgttactgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGC
species | Zea mays |
transcript | GRMZM2G064988_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|74243422|gb|DT651336.1|DT651336
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|9028651|gb|BE238691.1|BE238691
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|211327564|gb|FL371063.1|FL371063
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCA-CAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|78544086|gb|DV621584.1|DV621584
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|26557837|gb|CA830072.1|CA830072
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|76284202|gb|DV023770.1|DV023770
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|60348995|gb|DN215968.1|DN215968
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|8665349|gb|BE186165.1|BE186165
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|28910088|gb|CB331256.1|CB331256
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|113701690|gb|EE679194.1|EE679194
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|33096101|gb|CF056095.1|CF056095
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: TGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|211199113|gb|FL383377.1|FL383377
genomic: TGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|8665340|gb|BE186156.1|BE186156
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|4885900|gb|AI677020.1|AI677020
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|60399890|gb|DN232700.1|DN232700
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|9028622|gb|BE238662.1|BE238662
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|22552497|gb|BU102336.1|BU102336
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: CGCGAGAAGACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|31558542|gb|CD527754.1|CD527754
genomic: CGCGAGAAGACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|15499296|gb|BI595809.1|BI595809
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|21843145|gb|BQ703726.1|BQ703726
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|20802464|gb|BQ293514.1|BQ293514
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|60291853|gb|DN190092.1|DN190092
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|86470083|gb|DY236453.1|DY236453
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|60347753|gb|DN214726.1|DN214726
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|31664335|gb|CD573060.1|CD573060
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|60343137|gb|DN210110.1|DN210110
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|26456052|gb|CA827635.1|CA827635
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|101396763|gb|EB820307.1|EB820307
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|18178204|gb|BM379414.1|BM379414
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|101396473|gb|EB820163.1|EB820163
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|30087735|gb|CB885941.1|CB885941
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|211045986|gb|FL421700.1|FL421700
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|211327957|gb|FL398348.1|FL398348
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAATGAACCAEST: gi|211126711|gb|FL428261.1|FL428261
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTAGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAEST: gi|101396475|gb|EB820164.1|EB820164
genomic: ACCTGTCCTCT-GCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
EST: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG GTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
genomic: ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGGgtaagcgtgc ... ctgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCA
taagacaccatggaccatgcactgaagaaagttgaccgtttgttactgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGC
agttgac putative branch site (score: 154)
ctgtttcc putative PPT
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattgtgcacatcttgtcttacatgccttgcagtagagattgataagacaccatggaccatgcactgaagaaagttgaccgtttgttactgtttccagGTTGCTGGTCACCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG