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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC

Basic information

species Zea mays
transcript GRMZM2G064426_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g38820.5 (Oryza sativa), 3'ss of exon 1
gtaagtc-----cctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgt-ttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
|| ||||     ||||| || |  |   ||    |||| || |   || |   |||      || ||  | | | || | |   ||   |||  |||      ||    |    ||  || ||  ||    |||        ||    || ||||||||| || || ||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| || |||||||| || || |||
gtgagtcgtcgccctcgtcctcccccctcttgtgctctgctctgctct-gctctgtcttcttttgagttttgagctttg-agctcgttgtttgacttgtcgttggcggcgatgagatgtgactgggtttttgttgtggtggggcaacattacagGGCGAGCGATAAATGCCAGAGGGAGAAGCGCAAGACCATCAACGGCGACGACTTGCTGTGGGCGATGGCCACGCTGGGCTTCGAGGACTACATCGAGCCC

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G33550.2 (Glycine max), 3'ss of exon 2
-----------------------gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttggg-aattcagagtggcgtttcgcaaaccgcactttagcttaggt--ggggttttgtg-----ttgacttgtctacgtccacgttccttgtc--tgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
                         |  |||      ||      | | |   |  | | || |||    |||||    |||  | ||  ||  ||    ||      |||      | |  |||||| || |     || | ||    |  ||||||  | | ||   |     ||||||||||||||| || ||||||| ||||||| | ||||| |||||||| |||||  | || ||||||||||| ||  | |||||||| ||||| ||||| || 
gtgagtcagttattagcaactatacatatccagttatcgatatcaaatgttttttgttttttagctcaaaatgttttttaatgtaaagctgcagttttttaatttttattttttggggattgggggttctgagaattttttaattactgaattccacgcacgtggttattatgacttgcagGGCGAGTGAGAAATGCCAGAAGGAGAAGAGAAAGACAATCAATGGAGACGATTTACTATGGGCCATGGCAACTTTAGGGTTTGAAGACTACATTGAGCCG

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G34050.1 (Glycine max), 3'ss of exon 1
--------gtaagtcc-ctcggccgcggctgactctgactcttctgtttgcttggcatgt--------tgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttcct------tgtctgct---gtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
        | || |   |    ||    |  |   |   | ||   || |||    ||||        |   |||  |   | ||  ||    |     | |||        || || ||| ||   | |||| ||  ||    ||||       ||| |  |   |  |||||||||||||| || ||||||| ||||||| | ||||| |||||||| |||||  |||| ||||||||||||||  | || ||||| ||||| || || || 
gtcagttagcaactatacatatccatatcaaatgttttgtttttatttagctcaaaatgtctttttttttttaatggatgattgcagttttttatttttattttttggggattgagggtttctgagaatttgtttatttctgaattccacccacgtgtttatttcggcgtgcagGGCGAGTGAGAAATGCCAGAAGGAGAAGAGAAAGACAATCAATGGAGACGATTTGCTATGGGCCATGGCCACTTTAGGATTTGAAGACTACATAGAGCCG

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT3G53340.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtccctcggccgcggct----gactctgactcttctgtttgcttggcatgttgggaattcagag---tggcgtttcgcaaaccgcact----ttagcttaggtggggttttgtgttgacttgtctacgtccacgtt----ccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
|||| | | |   |  |         | | | ||  || ||||   ||||    |   |  |  | ||   |    |||   ||     | |    |||  ||   |||| | ||  |   | |   ||| ||| |  ||      |||| |    |||  ||||| ||||| |||||||| || |||||  |||||||||||||||| || ||  |||| ||||| ||||||||  | || || || || || || || |||
gtaatttctttctctactttctcaaaaatgttacctttttgttgctttggtggttatagcgtgtaaagccctcttctttgttaagttagattgatgttatattcattgggttgttaagcaaagtca-ctatgtcgattttggaatattgttttgccttt-tagGGCTAGTGATAAGTGCCAAAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGGGCTATGGCCACTTTAGGATTCGAAGATTACATCGATCCC

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0004g03490.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
                               ||| |||||    || |       ||    |  | | ||||            |||   ||   |    |||   | | | ||| ||  ||            ||||   |||| || ||||||||||||||||||| ||||||| ||||||| || ||||| || ||  |  | ||||| ||||| ||| | |||||||| || |||||||| || 
-------------------------------cttttgtttttccggta----accaaacggggttagggtttttttttttttgttttt-tttgtttttaatttcaagataaattgactctgt------------tctgggttttgaagAGCGAGTGACAAGTGCCAGAAGGAGAAGAGGAAGACAATTAATGGTGATGATTTATTATGGGCAATGGCTACGTTAGGGTTTGAAGATTATATTGATCCT

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv08s0040g03260.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggc-gtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgc--agGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
                                                             |  |||| | | |           || |  ||||| || |    ||| |   | || |  ||     ||  || ||   ||  |||  ||||||||||| || || ||||| |||||| ||||||| || ||||| || ||  |||| ||||| ||||| ||  | ||||||||||| |||||||| || 
-------------------------------------------------------------gtatggctgatgcattttttctttttaattttaggcggtgc---gtgattgatggtgt-tgttggttttgtttttcaattggatgcctagGGCGAGTGATAAATGTCAGAGAGAGAAGAGGAAGACTATTAATGGGGATGATTTGCTCTGGGCAATGGCGACTTTAGGGTTTGAGGATTATATTGATCCG

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0019g03600.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
                            |   |    ||  | |  ||||   |   || |         ||  |||     | |   | || |||   |   | ||   | |  | |  |   | ||| ||||| |         ||||| ||||| ||||| ||||  |||||||| ||||| || ||||| || || ||||| ||||| ||||| || || || ||||| || ||||||||||| 
----------------------------aaaatatccttcacctaacatggcagagtttga---------tttacaaggaa-attagggttttggttttgcaat-tgcaaaatattttttgaaaatgtttcttgttt---------agGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCA

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: EDP06643 (Chlamydomonas reinhardtii), 3'ss of exon 1
----------gtaagtccctcggccgcg-gctgactctgactcttctgtttgcttggcatgttgggaattca-gagtggcgtttcgcaa-accgcactt-tagcttaggtggg-gttttgtgttgacttgt-ctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
          |   | ||| | || |   |  ||| | | | |  | ||   |   ||  ||  |||   |  |    ||     || |  || |||    ||| |   |||  ||   | ||  |    | ||| |   |      | || |||  | || ||||| ||||||||||||||| ||||||||||||| || || || |||||||||||||||||||||||| | ||| |||| |||||||| ||  | || || 
gtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgc-cgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgata----tggtttgcactatgtagGGCTAGTGACAAGTGCCAGCGGGAGAAGCGGAAAACAATTAACGGCGACGACCTGCTGTGGGCCATGACGACGTTGGGCTTTGAGGAGTACCTGGAGCCG

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ24973 (Selaginella moellendorffii), 3'ss of exon 1
gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
                                                                                     | ||  | | |||   ||  |     | | | |      ||  || |  ||| |  ||||||| || |||||||||||||| || |||||| ||||||| ||||||||||| ||| |||| ||||| |||  ||||||||| || ||||| ||  | ||||| 
------------------------------------------------------------------------------------gtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctac--tttgcagAGCCAGTGACAAGTGCCAAAGAGAGAAGAGGAAGACGATCAATGGCGATGACTTGCTATGGGCAATGAGCACGCTGGGCTTCGAGGAGTACTTGGAACCT

upper sequence: GRMZM2G064426_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ15374 (Selaginella moellendorffii), 3'ss of exon 1
gtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
                                                                                           || ||   | || |        ||   | ||  ||  || |  ||| |  |||| || || |||||||||||||| || |||||| ||||||| ||||||||||| ||| |||| ||||| |||  ||||||||| || ||||| ||  | ||||| 
------------------------------------------------------------------------------------------gtaagtattgcttcgatcctttgtggtgatgttaactatcttcttctac--tttgtagAGCCAGTGACAAGTGCCAAAGAGAGAAGAGGAAGACGATCAATGGCGATGACTTGCTATGGGCAATGAGCACGCTGGGCTTCGAGGAGTACTTGGAACCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338423|gb|DN205396.1|DN205396
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCA-TGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|31664551|gb|CD573484.1|CD573484
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|31664550|gb|CD573483.1|CD573483
EST:     GAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211326581|gb|FL327335.1|FL327335
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211038566|gb|FL344527.1|FL344527
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGAGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211259760|gb|FL311703.1|FL311703
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGAGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211260502|gb|FL345526.1|FL345526
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAG
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAG
EST: gi|71311885|gb|DR792413.1|DR792413
EST:     CGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: CGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|29543654|gb|CB604034.1|CB604034
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|71446912|gb|DR827962.1|DR827962
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|60397343|gb|DN230159.1|DN230159
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|71311886|gb|DR792414.1|DR792414
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211272416|gb|FL334356.1|FL334356
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTTACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|149102150|gb|EE287580.2|EE287580
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211533900|gb|FL308309.1|FL308309
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGAGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211009572|gb|FL317976.1|FL317976
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGAGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|149102149|gb|EE188096.2|EE188096
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|60344410|gb|DN211383.1|DN211383
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|71315806|gb|DR794556.1|DR794556
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|149107729|gb|EE189603.2|EE189603
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|71315807|gb|DR794557.1|DR794557
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|211255094|gb|FL319900.1|FL319900
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGAC
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGAC
EST: gi|76930838|gb|DV172525.1|DV172525
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
EST: gi|26557696|gb|CA829931.1|CA829931
EST:     GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGA                         GGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA
genomic: GAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 259

TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 118

TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 92

TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 112

TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccct ... ctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcagGGCGAGTGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCC
            tgttgac  putative branch site (score: 112)