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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccactgttgttaggatttggttcttgtgatttttctggacactatcagaatcctttagcaaactccactgtaactggttttgttaccctgtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG

Basic information

species Zea mays
transcript GRMZM2G064336_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064336_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g47340.1 (Oryza sativa), 3'ss of exon 2
gccactgttgttaggatttggttcttgtgatttttctggacactatcagaatcctttagcaaactcc------actgtaactggttttgttaccctgtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG
   | | |   ||  | |  |||  ||||     |  |||  || ||| |  | || |   || | |       ||||||| || |||  | | ||| ||| | ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||
tgtattttgtctatcaataagtttgtgtg-----tgaggatgctgtcaaatgctttcaatcaagttctgtaaggctgtaacagggttttgtgctctgctttgc-agTGAGATTGCCAAGCACTTGTCACTTCCACCAGTAAAGCTCCATTGTAGCATGCTTGCTGAGGATGCAATTAAAGCTGCCGTGAAAGACTATGAAGCAAAG

upper sequence: GRMZM2G064336_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S39_352V6.2 (Physcomitrella patens), 3'ss of exon 4
gccactgttgttaggatttggttcttgtgatttttctggacactatcagaat--ccttta-gc---aaactccactgtaactggttttgttaccctgtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG
      ||    | |   |  |   || |   ||| |||    |  |  | |  || ||| ||   |||    |  | |  |||| | | ||   | ||||| |||||| ||||| || || |||||  | ||||| || ||| | || |||||||||||||| |||||||| |||||||| |||||||| |||||| | || || 
------gtgtacaaggcattatgtgtgagtactttatgggtgttgacctattttccattatgcttgaaagattaaagcatgtggtgtgggtattttttttttgcagTGATATTGCCAAACATTTGTCTTTGCCACCTGTGAAGTTGCACTGCAGCATGCTTGCTGAGGATGCTATTAAAGCGGCTGTGAAGGACTACAAGGCTAAA

upper sequence: GRMZM2G064336_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ10697 (Selaginella moellendorffii), 3'ss of exon 2
gccactgttgttaggatttggttcttgtgatttttctggacactatcagaatcctttagcaaactccactgtaactggttttgttaccctgtttttc---cagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG
                                            |      | ||| ||   | | | | |   ||    |   | | || | ||     |||||| || || |||||  |||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||| ||  | ||||| ||||| || |||
-----------------------------------------gtaacttttcttcttgagaggatttctccgaggctaagctctctcctctttcttcttcgcagTGACATCGCCAAGCATCTGTCGCTGCCGCCAGTGAAGCTCCACTGCAGCATGCTTGCCGAGGATGCGATCAAAGCCGCGATCAAAGATTACGACGCGAAG

upper sequence: GRMZM2G064336_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ35746 (Selaginella moellendorffii), 3'ss of exon 2
gccactgttgttaggatttggttcttgtgatttttctggacactatcagaatcctttagcaaactccactgtaactggttttgttaccctgtttttc---cagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG
                                            ||     | ||| ||   | |   | |   ||    |  || | || | ||     |||||| || || |||||  |||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||| ||  | ||||| ||||| ||||||
-----------------------------------------gtaatttttcttcttgagaggatttttccgaggctaagctcattcctctttcttcttcgcagTGACATCGCCAAGCATCTGTCGCTACCGCCAGTGAAGCTCCACTGCAGCATGCTTGCCGAGGATGCGATCAAAGCCGCGATCAAAGATTACGACGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148944341|gb|EC889440.2|EC889440
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29946110|gb|CB815984.1|CB815984
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATT
EST: gi|211231795|gb|FL047192.1|FL047192
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211103907|gb|FL456511.1|FL456511
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTKACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|148969246|gb|EE020002.2|EE020002
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|22472955|gb|BU037435.1|BU037435
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211227655|gb|FL047154.1|FL047154
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|110515413|gb|EE020001.1|EE020001
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29543738|gb|CB604118.1|CB604118
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|148994712|gb|EE034209.2|EE034209
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29130703|gb|CB381407.1|CB381407
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCA
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTT-GTCCCTTCCACCAGTAAAGCTCCATTGCAGCA
EST: gi|148944340|gb|EC889439.2|EC889439
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|31558800|gb|CD528012.1|CD528012
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211223534|gb|FL047128.1|FL047128
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTT
EST: gi|211231800|gb|FL047197.1|FL047197
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTT
EST: gi|29946108|gb|CB815983.1|CB815983
EST:     GAATGGGTGAAGGGAAACCCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|60344105|gb|DN211078.1|DN211078
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|76014270|gb|DT941440.1|DT941440
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211223538|gb|FL047132.1|FL047132
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|31558799|gb|CD528011.1|CD528011
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29576901|gb|CB617013.1|CB617013
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211223537|gb|FL047131.1|FL047131
EST:     AATGGGTGAAGGGAAAACCAAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGAT-GCAAAGCACTTGT
genomic: AATGGGTGAAGGGAAAACCAA-TGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGT
EST: gi|211233850|gb|FL047200.1|FL047200
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211231791|gb|FL047188.1|FL047188
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCC
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCC
EST: gi|211225606|gb|FL047149.1|FL047149
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCC
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCC
EST: gi|18180816|gb|BM382026.1|BM382026
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|67015031|gb|CO443780.1|CO443780
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|84980621|gb|DW530970.1|DW530970
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|19770147|gb|BQ034868.1|BQ034868
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211233858|gb|FL047208.1|FL047208
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTC
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTC
EST: gi|76014269|gb|DT941439.1|DT941439
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|67014548|gb|CO443297.1|CO443297
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCTATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|12046037|gb|BF728072.1|BF728072
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211221477|gb|FL047119.1|FL047119
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCAT
EST: gi|148994711|gb|EE034208.2|EE034208
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29544888|gb|CB605496.1|CB605496
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|16377370|gb|BI991888.1|BI991888
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211338855|gb|FL047214.1|FL047214
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCC
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCC
EST: gi|101390795|gb|EB817332.1|EB817332
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|21394191|gb|BQ538621.1|BQ538621
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29543439|gb|CB603835.1|CB603835
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|22472638|gb|BU037118.1|BU037118
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|22715142|gb|BU197600.1|BU197600
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|32164855|gb|CD670173.1|CD670173
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29544128|gb|CB604508.1|CB604508
EST:     GAATGGGTGAAGGGAAAACCGATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|5791078|gb|AI977870.1|AI977870
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211225607|gb|FL047150.1|FL047150
EST:     AATGGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: AATGGG-TGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|31910689|gb|CD651550.1|CD651550
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|60395112|gb|DN227981.1|DN227981
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|31664639|gb|CD573572.1|CD573572
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|71773171|gb|DR971084.1|DR971084
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|31910815|gb|CD651612.1|CD651612
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|67014384|gb|CO443133.1|CO443133
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|18179771|gb|BM380981.1|BM380981
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211227669|gb|FL047168.1|FL047168
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCC-TTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|78179725|gb|DV550098.1|DV550098
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|60400651|gb|DN233458.1|DN233458
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|14997167|gb|BI319204.1|BI319204
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|113702948|gb|EE680452.1|EE680452
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|22545637|gb|BU097996.1|BU097996
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|15199189|gb|BI423704.1|BI423704
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211233852|gb|FL047202.1|FL047202
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|29543770|gb|CB604150.1|CB604150
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|22545585|gb|BU097944.1|BU097944
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211233856|gb|FL047206.1|FL047206
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|15080359|gb|BI389034.1|BI389034
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATTC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|60355795|gb|DN222768.1|DN222768
EST:     GGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|37392115|gb|CF633304.1|CF633304
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211229726|gb|FL047179.1|FL047179
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|84980588|gb|DW530937.1|DW530937
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211540771|gb|FL447650.1|FL447650
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|149009798|gb|EE041689.2|EE041689
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|10697596|gb|BE997320.1|BE997320
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211221469|gb|FL047111.1|FL047111
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAA-AATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211233849|gb|FL047199.1|FL047199
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACC
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACC
EST: gi|31998107|gb|CD661926.1|CD661926
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211221481|gb|FL047123.1|FL047123
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCYTGACAATCAAGAATAC                         TGAGATTGCAAAGCAC
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCAC
EST: gi|29543413|gb|CB603809.1|CB603809
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211225610|gb|FL047153.1|FL047153
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211221471|gb|FL047113.1|FL047113
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTYCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211233860|gb|FL047210.1|FL047210
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCA
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCA
EST: gi|31910691|gb|CD651551.1|CD651551
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211229717|gb|FL047170.1|FL047170
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTTCCACCAGTAAAGCTCCATT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTT-CCACCAGTAAAGCTCCATT
EST: gi|211221476|gb|FL047118.1|FL047118
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|211221474|gb|FL047116.1|FL047116
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACNATCAAGAATAC                         TGAGATTGCAAAGCACT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACT
EST: gi|28984128|gb|BQ538955.2|BQ538955
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
EST: gi|15057182|gb|BI361154.1|BI361154
EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATAC                         TGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 231

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 291

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 293

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG


Block sizes: 42 (upstream exon), 47 (downstream exon)
Score: 264

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTCTTGACAATCAAGAATACgtaagtcttc ... gtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagaatcctttagcaaactccactgtaactggttttgttaccctgtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG
                       ctgtaac  putative branch site (score: 264)
                                      ttaccctgtttttcc  putative PPT
                                 ttttgtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccactgttgttaggatttggttcttgtgatttttctggacactatcagaatcctttagcaaactccactgtaactggttttgttaccctgtttttccagTGAGATTGCAAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCGGAGGATGCCATTAAAGCTGCTGTGAAAGACTACGAAGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
-ccactgt
- - -tgttgtt
- - - - - - - - - tggttct
- - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - -ctggaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtt