ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...actgatgttcagtaatatgccatattgttgacatgaacacatcagattccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

Basic information

species	Zea mays
transcript	GRMZM2G063864_T01
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 3'ss of exon 2

actgatgttcagtaatatgccatattgttgaca--tgaacacatcagat--tccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
    ||| | | |  ||    | ||       |         || |  |  ||     || ||| | |  |     |||||||||| | || |  || |  |||||||||||||| ||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||
---aatgatgaatggtacattacatcacaagtagtctgttgaatgaagttatcttcccttgtttatgtcatagtaatgacatagtgatctcctattttt-tcagAGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGACCCTTCCAGCTGAGGAAGTACCTCCTGAACTTCCAGAACCAGCACTGGG

upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G02470.1 (Arabidopsis thaliana), 3'ss of exon 2

--------------------------------------------------------------------------------actgatgttcagtaatatgccatattgttgac--atgaacacatcagattccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                                                                                  |||  ||   |  | |   ||  |||||    | ||     | || |        | | |||  | |  | || |  |  | | |||||  |||||  |||||| ||||| ||||| || |||||  | ||||||||||| |||||||| | ||| || | ||||||||| |||||||||||||| ||||||||  | ||
gtgagttatttcttcacaacttttaaaaaattagtcttgcttagcttctatagtttctagtgaaatgttttgttgaagttgttgagcttgtatgttgttgaattgtgttggttaaagattgagttagttagtcctcctctgtgtggtttttctttaaggtgtttcattcttgtttatgt-agAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTAGG

upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G14510.1 (Arabidopsis thaliana), 3'ss of exon 2

actgatgttcagtaatatgccatattgttgacatgaacacatcagattccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
  |  |      |  |  |   | |   | | |||||   |      |   |  ||| |  | ||| |   ||     | | | || |||  ||   ||||||| || |||||||| ||||||||  | ||||||||||| |||||||| | |||||| | |||||| || |||||||||||||| ||||||||  | ||
ctttttaagtgtttgtgagatttgtacctaagatgaagttagttctctttgtggtttctcttcttgacttcttagtgaattacgttttttgctaatgcagAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGG

upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 3'ss of exon 2

actgatgttcagtaatatgccatattgttgacatgaa-cacatcagattccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
  |  | |  | | |  |   | ||| |  | ||  | |  ||        | ||   |     |||     ||   ||  |  |   ||| || |   |||||| ||||||||||| || |||||  | ||||||||||| ||||| || |  || || | |||||| ||||||||||||||||||||||||||| | ||
-ttattttatattcactttttacattatccatatatatcttatgttggcataaatgagtgcaacttgcttattttggatgtttgtaaatttgttcttatagAGAAGGAGAACTTGTGTCTGTATGGACTTCCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTACCTCCTGAGCTTCCAGAACCAGCATTAGG

upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ23237 (Selaginella moellendorffii), 3'ss of exon 2

------------------actgatgttcagtaatatgccatattgttgacatgaacacatcagattccatattt---ttttgttttgtcccgttgacatagtg---ctttctttcttatg----ccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                   ||   ||  |||    ||| |     |  | ||  |    || | |    | |||   | |  | ||| |        || |||   |||| | ||||||     |||||||| || || ||||||||||||||| | ||  | |||||||||||||| | ||||||||| |||||||| || || ||||| || || ||||| || ||
gtttgtactctttcttatcctttagtctagtgtggtgctactacatgtatatataatggtcgggtcttttgtttaagtgtgatattgactttggtgtatggtgtcactttttctcttattgactccagAGAAGGAAAATTTGTGCCTTTATGGTCTCCCCGACGAGACTTGGGAGGTGAATCTTCCAGCCGAGGAAGTGCCGCCGGAGCTCCCTGAGCCAGCGCTCGG

upper sequence: GRMZM2G063864_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ25244 (Selaginella moellendorffii), 3'ss of exon 2

------------------actgatgttcagtaatatgccatattgttgacatgaacacatcagattccatatttttttgttttgtcc-cgttgacata----gtgctttctttcttatg----ccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                   ||   ||  |||    ||| |     |  | ||  |    || | |    | |||   |||  | |   | ||| | ||    ||   || || |||||     |||||||| ||||| ||||||||||||||| | ||  | |||||||||||||| | ||||||||| |||||||| || || ||||| || || ||||| || ||
gtttgtcctctttcttatcctttagtctagtgtggtgctactacatgtatatataatggtcgggtcttttgtttaagtgtgatattgactttggcgtatggtgtcactttttccttattgactccagAGAAGGAGAATTTGTGCCTTTATGGTCTCCCCGACGAGACTTGGGAGGTGAATCTTCCAGCCGAGGAAGTGCCGCCGGAGCTCCCTGAGCCAGCGCTCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211089671|gb|FL143709.1|FL143709

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|5567021|gb|AI881932.1|AI881932

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211541755|gb|FL143681.1|FL143681

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|28909913|gb|CB331162.1|CB331162

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|148956927|gb|EC902857.2|EC902857

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|31360935|gb|CD445292.1|CD445292

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211541758|gb|FL143684.1|FL143684

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|148973532|gb|EE024632.2|EE024632

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|67015174|gb|CO443923.1|CO443923

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|31441001|gb|CD510432.1|CD510432

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211273111|gb|FL373250.1|FL373250

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|91056115|gb|EB166533.1|EB166533

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538738|gb|FL143667.1|FL143667

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|30705614|gb|CD058845.1|CD058845

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|148943443|gb|EC888502.2|EC888502

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087221|gb|FL143694.1|FL143694

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|22472296|gb|BU036776.1|BU036776

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|21432175|gb|BQ547665.1|BQ547665

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|28909531|gb|CB330977.1|CB330977

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|74233488|gb|DT641402.1|DT641402

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|37421141|gb|CF648268.1|CF648268

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087222|gb|FL143695.1|FL143695

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211405597|gb|FL390184.1|FL390184

EST:     ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|148942470|gb|EC887488.2|EC887488

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211488746|gb|FL429925.1|FL429925

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087220|gb|FL143693.1|FL143693

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|26558205|gb|CA830440.1|CA830440

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|31441082|gb|CD510513.1|CD510513

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|149081993|gb|EE171161.2|EE171161

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|26558541|gb|CA830776.1|CA830776

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089669|gb|FL143707.1|FL143707

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|40335649|gb|CK369719.1|CK369719

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089673|gb|FL143711.1|FL143711

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|22472098|gb|BU036578.1|BU036578

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|22133724|gb|BQ833869.1|BQ833869

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|87156313|gb|DY401102.1|DY401102

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|60343509|gb|DN210482.1|DN210482

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|67022293|gb|CO451042.1|CO451042

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|93013611|gb|EB639131.1|EB639131

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|20802891|gb|BQ293926.1|BQ293926

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCTAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089667|gb|FL143705.1|FL143705

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538741|gb|FL143670.1|FL143670

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089668|gb|FL143706.1|FL143706

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089672|gb|FL143710.1|FL143710

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|148963054|gb|EE014007.2|EE014007

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087218|gb|FL143691.1|FL143691

EST:     ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538739|gb|FL143668.1|FL143668

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|71757175|gb|DR955112.1|DR955112

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|148966200|gb|EE017149.2|EE017149

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|76019816|gb|DT946986.1|DT946986

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|50337566|gb|CO532692.1|CO532692

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087228|gb|FL143701.1|FL143701

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|23357493|gb|BU645142.1|BU645142

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538744|gb|FL143673.1|FL143673

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087231|gb|FL143704.1|FL143704

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|91874786|gb|EB404743.1|EB404743

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538740|gb|FL143669.1|FL143669

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211541757|gb|FL143683.1|FL143683

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211448345|gb|FL416386.1|FL416386

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|213174383|gb|FM184210.1|FM184210

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211541760|gb|FL143686.1|FL143686

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|101395826|gb|EB819840.1|EB819840

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538737|gb|FL143666.1|FL143666

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|91867783|gb|EB399794.1|EB399794

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087225|gb|FL143698.1|FL143698

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211538743|gb|FL143672.1|FL143672

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211541762|gb|FL143688.1|FL143688

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089679|gb|FL143717.1|FL143717

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|21809488|gb|BQ667806.1|BQ667806

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211087229|gb|FL143702.1|FL143702

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|30087500|gb|CB885706.1|CB885706

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGTTATTTTT
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|26456376|gb|CA827959.1|CA827959

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

EST: gi|211089676|gb|FL143714.1|FL143714

EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 1471

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 365

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 395

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 262

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... cttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

attccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

                        cgttgac  putative branch site (score: 262)
                                     ctttctttcttatgcc  putative PPT
     atatttttttgttttg  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgatgttcagtaatatgccatattgttgacatgaacacatcagattccatatttttttgttttgtcccgttgacatagtgctttctttcttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTCACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- tgatgtt
- - - - - - - -tatgcca
- - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttc

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data

Putative cis-regulatory sequences