1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtccgtctggaaccttttatctaatttcatttacttttttgagttgaacggttttaaatgtaatctttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
species | Zea mays |
transcript | GRMZM2G063851_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|89248619|gb|DY620405.1|DY620405
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|148929642|gb|EC876096.2|EC876096
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTGCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|76010584|gb|DT937754.1|DT937754
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|31363851|gb|CD448206.1|CD448206
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|149100798|gb|EE186892.2|EE186892
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|6973552|gb|AW438288.1|AW438288
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|110202089|gb|EC883986.1|EC883986
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|71771088|gb|DR969025.1|DR969025
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|78021514|gb|DV489901.1|DV489901
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|37380261|gb|CF626924.1|CF626924
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|5901109|gb|AW042209.1|AW042209
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|32796104|gb|CD948340.1|CD948340
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: GATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|110954440|gb|EE174492.1|EE174492
genomic: GATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|148991805|gb|EE033386.2|EE033386
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|93284645|gb|EB676909.1|EB676909
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|149082973|gb|EE172210.2|EE172210
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: GGGAGTTTG-CCTGAAAGCA-TTGCCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|60395299|gb|DN228168.1|DN228168
genomic: GGGAGTTTGCCCTG-AAGCATTTG-CCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
taatttcatttacttttttgagttgaacggttttaaatgtaatctttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
atctaat putative branch site (score: 294)
tcttt putative PPT
ttttaaatgtaatctt TA-rich tract