Sequence
atgc intronic sequence ATGC exonic sequence...ggtcttgtatgagtatttattgcagttgaataattggtgttcctcttccttagataataatcaatccacctaactgatgctgaaatgcctttaaatttagATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G063253_T09 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g07670.1 (Oryza sativa), 3'ss of exon 3
ggtcttgtatgagtatttattgcag---ttgaat--aattggtgttcctcttccttagataataatcaatccacctaactgatgctgaaatg-cctttaaatttagATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAG
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-----agcacaacattttattgcaagcatttatttcaattgatgtgcc-ctttcttccacactaatcaatccacctaacttatgccgaaatgtcctttatgtctagATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAG
upper sequence: GRMZM2G063253_T09 (Zea mays), 3'ss of exon 2
lower sequence: AT1G06890.2 (Arabidopsis thaliana), 3'ss of exon 3
ggtcttgtatgagtattt--attgcagtt---gaataat-tggtgttcctcttccttagataataatcaatccacctaactgatgctgaaatgcctttaaatttagATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAG
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------gtatagctttttccatttcagttactgcatgatgtgatatccatttttaactagtgttgttctaatt-tctaacccat-cttctgttccgttgataatagATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAG
upper sequence: GRMZM2G063253_T09 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 4
-------ggtcttgtatgagtatttattgcagttgaat----aattggtgttcctcttcc--ttagataataatcaatcca-------cctaactgatgctgaaatgcctttaaattt-agATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAG
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gtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccagATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74245192|gb|DT653106.1|DT653106EST: TTGGGCTCCTCAACTTGAGTCTTGGCTTCAACTCTGTTGGGTTTTACCAG ATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTC
genomic: TTGGGCTCCTCAACTTGAGTCTTGGCTTCAACTCTGTTGGGTTTTACCAGgtacgtagct ... ttaaatttagATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccttagataataatcaatccacctaactgatgctgaaatgcctttaaatttagATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAG
tgccttt CT-rich tract
tagataataatcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtcttgtatgagtatttattgcagttgaataattggtgttcctcttccttagataataatcaatccacctaactgatgctgaaatgcctttaaatttagATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT