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...gtagaacatgtataattttgttatgatgatttttaaatttaatatttagctattgccaaaatgttagcattgtcttgctgatgatatctctatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTGCAGAGAGAGATATATTGCATGATATGGTGAAGATAGTGAAGAAAAAG
species | Zea mays |
transcript | GRMZM2G062953_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTEST: gi|71759744|gb|DR957681.1|DR957681
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTEST: gi|149076223|gb|EE164821.2|EE164821
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTEST: gi|148952868|gb|EC898858.2|EC898858
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTEST: gi|211192891|gb|FK977670.1|FK977670
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
EST: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACT CTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
genomic: AGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCACTAACTgtaagtctgt ... tatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTT
ttagctattgccaaaatgttagcattgtcttgctgatgatatctctatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTGCAGAGAGAGATATATTGCATGATATGGTGAAGATAGTGAAGAAAAAG
tgctgat putative branch site (score: 3)
tatctct putative PPT
atatctctatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaacatgtataattttgttatgatgatttttaaatttaatatttagctattgccaaaatgttagcattgtcttgctgatgatatctctatatttcagCTGTTGGAAACTGTTATAAAAAATTGTGGGGATATACTTCACATGCATGTTGCAGAGAGAGATATATTGCATGATATGGTGAAGATAGTGAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - catgtat
- - - - - - - -ttttgtt
- - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - -ctattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg