1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacgagtaataaatactttcgagaattgttatgattcaacccattgtttatggagcatcccatatgaacttgaaacctctatctcagctatacatcaagCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC
species | Zea mays |
transcript | GRMZM2G062425_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|60350894|gb|DN217867.1|DN217867
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|60400550|gb|DN233357.1|DN233357
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|149058791|gb|EE156812.2|EE156812
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|71760661|gb|DR958598.1|DR958598
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|76284272|gb|DV023840.1|DV023840
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|71775282|gb|DR973160.1|DR973160
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAGEST: gi|78118087|gb|DV536474.1|DV536474
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
EST: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCTATACATCAAG
genomic: GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G----------AGgtaacgagta ...
tgtttatggagcatcccatatgaacttgaaacctctatctcagctatacatcaagCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC
atatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgagtaataaatactttcgagaattgttatgattcaacccattgtttatggagcatcccatatgaacttgaaacctctatctcagctatacatcaagCTGCTGGACCAGAGCTAGTGCAAGCATGCCGGAAAGTTCCAGAGGTCAAACCAGGAGTCCGTTGTCCTACTGGAGAAGCTAGGATTACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC