1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttctttttacatcagatgtatttttttcttcagcctcttcaccatcagatatactatgactaagacctttttctttctcttttcttgggcatctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGGTCCCCATACTGAGTACATTATATCTCTTGATGCAGAGGACTTATCACA
species | Zea mays |
transcript | GRMZM2G062154_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGEST: gi|19272436|gb|BM888692.1|BM888692
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|19058652|gb|BM737319.1|BM737319
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|211111224|gb|FK952889.1|FK952889
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGAEST: gi|74244974|gb|DT652888.1|DT652888
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGEST: gi|211111223|gb|FK952888.1|FK952888
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGEST: gi|211112130|gb|FK952891.1|FK952891
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTTA-GGCGTEST: gi|211111218|gb|FK952883.1|FK952883
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGKGTATAAAGGGAAGTTTTCTCATGGCTGCTAGAAGAEST: gi|22490929|gb|BU050852.1|BU050852
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTT-CTCATGGCTGCTAGAAGA
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|149040587|gb|EE046828.2|EE046828
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGEST: gi|22490595|gb|BU050518.1|BU050518
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|211111222|gb|FK952887.1|FK952887
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTTA-GGCGTEST: gi|87152741|gb|DY397530.1|DY397530
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGACTT-AGGCGTEST: gi|74239976|gb|DT647890.1|DT647890
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGA-TTAAGGCGT
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGEST: gi|86466002|gb|DY232375.1|DY232375
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
EST: CATGCGGAATAAAAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAAAAGATTAAGGCGTGEST: gi|71329294|gb|DR801349.1|DR801349
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
EST: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTT CACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
genomic: CATGCGGAATAAGAACTCTACATTCTACCTCTACCTTGGCTTCACAAGTTgtaagtacaa ... catctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTG
tcagatatactatgactaagacctttttctttctcttttcttgggcatctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGGTCCCCATACTGAGTACATTATATCTCTTGATGCAGAGGACTTATCACA
cctttttctttctctt CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctttttacatcagatgtatttttttcttcagcctcttcaccatcagatatactatgactaagacctttttctttctcttttcttgggcatctgatagCACCTGTGTATAAAGGGAAGTTTCTCATGGCTGCTAGAAGATTAAGGCGTGGTCCCCATACTGAGTACATTATATCTCTTGATGCAGAGGACTTATCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - -tgtattt
- - - - - - - - - - - - - - cttcagc
- - - - - - - - - - - - - - - - - - - - caccatc