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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtattttatatatggatgcaaaggctgctgtgaatttggaatgtctacgatagcatcagaaatgttctatatatcttatcaattgtaacctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG

Basic information

species Zea mays
transcript GRMZM2G061620_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211500818|gb|FL228127.1|FL228127
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|76012358|gb|DT939528.1|DT939528
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|5296098|gb|AI782973.1|AI782973
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|7216451|gb|AW562573.1|AW562573
EST:     GTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: GTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500819|gb|FL228128.1|FL228128
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|4314922|gb|AI444722.2|AI444722
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500823|gb|FL228132.1|FL228132
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500820|gb|FL228129.1|FL228129
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|101401583|gb|EB822467.1|EB822467
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|32915276|gb|CF020088.1|CF020088
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|76280698|gb|DV020266.1|DV020266
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|4681058|gb|AI629728.1|AI629728
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
EST: gi|211500822|gb|FL228131.1|FL228131
EST:     AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
genomic: AGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacgatagcatcagaaatgttctatatatcttatcaattgtaacctttcacagAACAAGGGATCATCAAGTGCAGCACCAGCTAAGGTAACCGCGAATCAG
                                       ttgtaac  putative branch site (score: 2)
                                             cctttcac  CT-rich tract
                        tatatatcttatcaat  TA-rich tract