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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttcgacgcataatccatcttgaccacgagctatctctctctacatgcatgatgtctttatgtaacatggactcacaatattgcattaccttggagtagATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAGAAACCGTCGACTTGGGCGGCCTTCCGGTCCCTGAGACCGGCAGCCCGTC

Basic information

species Zea mays
transcript GRMZM2G061101_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433894|gb|DR814944.1|DR814944
EST:     GGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACTCATTTTCATTAG                         ATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAG
genomic: GGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACTCATTTTCATTAGgtgattatgg ... cttggagtagATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAG
EST: gi|67018716|gb|CO447465.1|CO447465
EST:     GGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACTCATTTTCATTAG                         ATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAG
genomic: GGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACTCATTTTCATTAGgtgattatgg ... cttggagtagATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAG
EST: gi|67029301|gb|CO458050.1|CO458050
EST:     GGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACTCATTTTCATTAG                         ATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAG
genomic: GGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACTCATTTTCATTAGgtgattatgg ... cttggagtagATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcatgatgtctttatgtaacatggactcacaatattgcattaccttggagtagATGACAATGGCTATGAAGAAGGAGGCGGTTCCTCCGACGAAGATGAGCAAGAAACCGTCGACTTGGGCGGCCTTCCGGTCCCTGAGACCGGCAGCCCGTC
                         gactcac  putative branch site (score: 2)
 ttacctt  putative PPT
 tttatgtaa  TA-rich tract