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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcctatttgttataatcgaataatgaagtgaatcatgcatttcctaattataaactgataattctgtttttctgctgtcagGTATTTGATACACTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACAGTAAAG

Basic information

species Zea mays
transcript GRMZM2G061094_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211284368|gb|FL403209.1|FL403209
EST:     GGACCTTCTTCTCTATTTGTATAGGATTTGTTTACTTTCAAGAATATCAA                         GTATTTGATACACTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTC
genomic: GGACCTTCTTCTCTATTTGTATAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcct ... ctgctgtcagGTATTTGATACACTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTC
EST: gi|211276972|gb|FL390070.1|FL390070
EST:     GGACCTTCTTCTCTATTTGTATAGGATTTGTTTACTTTCAAGAATATCAA                         GTATTTGATACACTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTC
genomic: GGACCTTCTTCTCTATTTGTATAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcct ... ctgctgtcagGTATTTGATACACTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgaatcatgcatttcctaattataaactgataattctgtttttctgctgtcagGTATTTGATACACTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACAGTAAAG
                                   ttctgtttttctgct  CT-rich tract
                  taattataaactgata  TA-rich tract