1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagtttggacttaaactttattttagccttgcttattacctctaagaattataagtttatgagtttttttttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATGAGAGGTCCTGCATACTATCTGGTCAGCATAGAACAGGAACTTGCAACT
species | Zea mays |
transcript | GRMZM2G060999_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATEST: gi|71299450|gb|DR785731.1|DR785731
genomic: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
EST: TAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATEST: gi|101398514|gb|EB821130.1|EB821130
genomic: TAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
EST: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATEST: gi|78544416|gb|DV621914.1|DV621914
genomic: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
EST: AGCGTAGATCAG-CTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATEST: gi|71325678|gb|DR799524.1|DR799524
genomic: AGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
EST: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATEST: gi|60400728|gb|DN233535.1|DN233535
genomic: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
EST: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATEST: gi|71325680|gb|DR799525.1|DR799525
genomic: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
EST: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAG GTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
genomic: TGGAGCGTAGATCAGTTTTTCTTGAGAGGAGGCGGAGGATACGGTCTCAGgtagtttgga ... ttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCAT
gccttgcttattacctctaagaattataagtttatgagtttttttttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATGAGAGGTCCTGCATACTATCTGGTCAGCATAGAACAGGAACTTGCAACT
tttttttttcttaat CT-rich tract
taagaattataagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttggacttaaactttattttagccttgcttattacctctaagaattataagtttatgagtttttttttcttaatagGTCAGAGCTCTGCAAAGGTTGGGCAGCAGGTTTGAAAATTTATCTGGTCATGAGAGGTCCTGCATACTATCTGGTCAGCATAGAACAGGAACTTGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG