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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttcaagaaatttaaaccatgcactcttcatcgtaggttcaaggcaatatctgtgttaatcttggggaccttcagtagattgctgagagttctccttgatacaggggaataaagATCCAAATAAGTTTTTGACATTGATCTGTAGCCAGTACTGCAATGGCTACGAAGCTTGTG

Basic information

species Zea mays
transcript GRMZM2G060977_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107954|gb|DV526372.1|DV526372
EST:     ATCCAATGAAGGCTGCCAACTTGACGCAAG                         ATCCAAATAAGTTTTTGACATTGATCTGTAGCCAGTACTGCAATGGCTACG
genomic: ATCCAATGAAGGCTGCCAACTTGACGCAAGgtgttcaaga ... gggaataaagATCCAAATAAGTTTTTGACATTGATCTGTAGCCAGTACTGCAATGGCTACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggggaccttcagtagattgctgagagttctccttgatacaggggaataaagATCCAAATAAGTTTTTGACATTGATCTGTAGCCAGTACTGCAATGGCTACGAAGCTTGTG
                                  ccttgat  putative branch site (score: 5)
                                                aataaa  TA-rich tract