Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatttctctgttgctattttcagtttagcgctctttactaagaataaagattctacttttctgttttccttaacggccttgatgaaatattatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA

Basic information

species Zea mays
transcript GRMZM2G060922_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060922_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g08660.1 (Oryza sativa), 3'ss of exon 2
-ccatttctctgttgcta-ttttcagtttagcgctctttactaagaataaagattctacttttctgttttccttaacggccttgatgaaatattatctaca--------gGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA
 |   |  |  |||||   | |||   || || || |||     |  ||  | | ||  ||||||| |  |         |||| | ||||||||||||||        ||| ||||||||||||||||| ||||| ||||| || || |||||||| ||||| || ||||||||||| || ||  |||| ||  |||||||||| ||| 
tctgatgttaagttgccgctcttctcatttgcccttttt-----ggctactgttccttgttttctggtaact-----aatcttggttaaatattatctacaattccacagGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGG

upper sequence: GRMZM2G060922_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G28430.1 (Glycine max), 3'ss of exon 2
--ccatttctctgttgctattttcagtttagcgctctttactaagaataaagattctacttttctgttttccttaacggccttgatgaaatattatc--tacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA
   |  || | | |   | || | | ||||      || | |  || ||     |  || |     |     | ||   |  ||||    |||| ||  | ||||| ||||||||||||||  | |||||| | || || || ||||| || |||||||| |||||||| ||||||||||  || || ||  | ||||| ||| 
cttctcttgtttttgaatcttctgattttaat----ttcagtttgattaggttctagacctagagatgccaatgaataactgtgatcggttattgtccctgcagGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGTCCCTTCACCGGAGCAATATTGGCTGCTTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211253570|gb|FL248337.1|FL248337
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148971198|gb|EE022054.2|EE022054
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|211517792|gb|FL248196.1|FL248196
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149037324|gb|EE155343.2|EE155343
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149075515|gb|EE164044.2|EE164044
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|101393523|gb|EB818693.1|EB818693
EST:     GCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: GCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148960985|gb|EE011682.2|EE011682
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|22542354|gb|BU092777.1|BU092777
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACC
EST: gi|148958203|gb|EC904409.2|EC904409
EST:     TCGTCCTTTTTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCCCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148990309|gb|EE031910.2|EE031910
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|101393525|gb|EB818694.1|EB818694
EST:     GCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: GCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|110527725|gb|EE031909.1|EE031909
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|71328829|gb|DR801098.1|DR801098
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|110517466|gb|EE022053.1|EE022053
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149096095|gb|EE181779.2|EE181779
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|211122791|gb|FL444964.1|FL444964
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149004821|gb|EE039326.2|EE039326
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|50325121|gb|CO520247.1|CO520247
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148958204|gb|EC904410.2|EC904410
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|4826148|gb|AI667776.1|AI667776
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148941800|gb|EC886766.2|EC886766
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|29947413|gb|CB816644.1|CB816644
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|211505983|gb|FL248122.1|FL248122
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATAC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATAC
EST: gi|71328831|gb|DR801099.1|DR801099
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|32799308|gb|CD951544.1|CD951544
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATACGTTA
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTA
EST: gi|149080962|gb|EE170057.2|EE170057
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148952804|gb|EC898795.2|EC898795
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGAGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|32845872|gb|CD985553.1|CD985553
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|148972708|gb|EE023668.2|EE023668
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149100547|gb|EE186632.2|EE186632
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149004820|gb|EE039325.2|EE039325
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149078870|gb|EE167684.2|EE167684
EST:     CGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCCA-CCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTT
genomic: CGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCC-AGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTT
EST: gi|149080961|gb|EE170056.2|EE170056
EST:     TCGTCCTCTTTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|32796722|gb|CD948958.1|CD948958
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTNTGGCTGGGCATATGTTA
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATT-TGGCTGGGCATATGTTA
EST: gi|211058997|gb|FL461761.1|FL461761
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
EST: gi|149077417|gb|EE166106.2|EE166106
EST:     TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCCGCCAAT                         GCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC
genomic: TCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 17

CCGCAACCCCATCATCAAGACATGGATGATCTCCATCTGCACTCTGTGCCTCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 7

CCGCAACCCCATCATCAAGACATGGATGATCTCCATCTGCACTCTGTGCCTCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 15

CCGCAACCCCATCATCAAGACATGGATGATCTCCATCTGCACTCTGTGCCTCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 587

CCGCAACCCCATCATCAAGACATGGATGATCTCCATCTGCACTCTGTGCCTCGTCCTCTCTGGTGCAGCATACACCGGCCCTTCCATGAACCCAGCCAATgtcagtttct ... ttatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagattctacttttctgttttccttaacggccttgatgaaatattatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA
                                  ttgatgaaatattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccatttctctgttgctattttcagtttagcgctctttactaagaataaagattctacttttctgttttccttaacggccttgatgaaatattatctacagGCATTTGGCTGGGCATATGTTAACAACCGCCATAATACGTGGGAGCAGTTCTATGTGTACTGGATATGTCCCTTCATTGGTGCCATTCTTGCTGCGTGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa