1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggcctcgattgtcttgcttggtaacgtagatgatgatacagcagcacaatttattactgtttgacccctgattgttgcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
species | Zea mays |
transcript | GRMZM2G060896_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|211200016|gb|FL079806.1|FL079806
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTAEST: gi|71305271|gb|DR788769.1|DR788769
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTA
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|211229916|gb|FL287072.1|FL287072
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|211227857|gb|FL287067.1|FL287067
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAG-CAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|74240569|gb|DT648483.1|DT648483
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|6918561|gb|AW400091.1|AW400091
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAGEST: gi|23199597|gb|BU582162.1|BU582162
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
EST: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTG GCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcg ... gcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
gatgatacagcagcacaatttattactgtttgacccctgattgttgcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
ccctgat putative branch site (score: 4)
ttgcctct putative PPT
aatttattactgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcctcgattgtcttgcttggtaacgtagatgatgatacagcagcacaatttattactgtttgacccctgattgttgcctctgcagGCAAAGCCAGCAAAGTTCAGTATTACAATAACCCGATGTGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG