1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtaacacttatgcatctccacagcattaggttaggttttgcgtctgaggaatgtgaatgctgactaattttgctgacaatatttttttttgtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
species | Zea mays |
transcript | GRMZM2G060669_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACCAAGGEST: gi|60394770|gb|DN227640.1|DN227640
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCA-CAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGGEST: gi|20802865|gb|BQ293915.1|BQ293915
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGATG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGGEST: gi|9733680|gb|BE512432.1|BE512432
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGGEST: gi|211247897|gb|FL075408.1|FL075408
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGGEST: gi|26456474|gb|CA828057.1|CA828057
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGGEST: gi|37395737|gb|CF635151.1|CF635151
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGGEST: gi|44901460|gb|CK828005.1|CK828005
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG ACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
genomic: GCCCTCCGCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... gtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
gaggaatgtgaatgctgactaattttgctgacaatatttttttttgtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
tgctgac putative branch site (score: 2)
tttttttttgt putative PPT
tgacaatatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacttatgcatctccacagcattaggttaggttttgcgtctgaggaatgtgaatgctgactaattttgctgacaatatttttttttgtgtgtgtagACCTGCCCTCTGCTGCTCAGGGTTTTCACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT