1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taatttactgattgtaaccagttacggatgttaccactttccagcacttttttttgaaagttttttttgttccaatgtaatagtgtcctattcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCACAGCGATAATTTGGCGAACTATGGAAAGTTATGCCGTGAAAGAACACA
species | Zea mays |
transcript | GRMZM2G060284_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAA GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|28187707|gb|CB179317.1|CB179317
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|211224212|gb|FK968311.1|FK968311
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|149085565|gb|EE175077.2|EE175077
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|13490745|gb|BG517509.1|BG517509
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|76937460|gb|DV175147.1|DV175147
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|211224215|gb|FK968314.1|FK968314
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCEST: gi|211224214|gb|FK968313.1|FK968313
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
EST: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAG GGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
genomic: TATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatcca ... ttcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTC
acttttttttgaaagttttttttgttccaatgtaatagtgtcctattcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCACAGCGATAATTTGGCGAACTATGGAAAGTTATGCCGTGAAAGAACACA
tcctattc CT-rich tract
tttttgaaagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttactgattgtaaccagttacggatgttaccactttccagcacttttttttgaaagttttttttgttccaatgtaatagtgtcctattcgttgcagGGAAACTTTCATGTGAAGGAAAAGTCGAGCATAAATTTGACATGGAACCTCACAGCGATAATTTGGCGAACTATGGAAAGTTATGCCGTGAAAGAACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -ctgattg
- - - - - - - - - - - - - - - - - - - - ccagcac