Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtcttgttaagacaatttgttgtttcaactgtgcttgttatctttttttatgtcgctttatggaaaattatgtggatattgaatgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG

Basic information

species Zea mays
transcript GRMZM2G059991_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059991_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 3'ss of exon 2
gtgagtgtcttgttaagacaatttgtt--gtttcaactgtgcttg--ttatctttttttatgtcgctttatgg-----aaaattatgtggatattgaatgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG
|| | | ||  ||  | |||| ||| |   ||||     | ||    |||  ||||||    | | | |          || | |||   ||||||  || ||| ||||| ||||| || || || || ||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
gtaattatccagtccatacaacttgctccatttctttcttcctccacttactttttttctactggatctccaatcaccgaattaatgaaaatattgggtgttttacagGAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCATTGATGAGGATTTTGGTTCATTTGAGGCACTTGTAAAGAAGATGAGTGCAGAAGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960461|gb|EE011056.2|EE011056
EST:     CTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: CTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60342800|gb|DN209773.1|DN209773
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149058839|gb|EE156860.2|EE156860
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60395736|gb|DN228606.1|DN228606
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71429171|gb|DR810221.1|DR810221
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|21389905|gb|BQ527954.1|BQ527954
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|211507633|gb|FL212146.1|FL212146
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|22935765|gb|BU572040.1|BU572040
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76933824|gb|DV173600.1|DV173600
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60400370|gb|DN233177.1|DN233177
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149085021|gb|EE174530.2|EE174530
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29576842|gb|CB616954.1|CB616954
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60394126|gb|DN226996.1|DN226996
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|31358052|gb|CD442409.1|CD442409
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60346223|gb|DN213196.1|DN213196
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60399935|gb|DN232742.1|DN232742
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76013538|gb|DT940708.1|DT940708
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|78076311|gb|DV504745.1|DV504745
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|211509987|gb|FL212152.1|FL212152
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGGGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|5124097|gb|AI745938.1|AI745938
EST:     CAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: CAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76281803|gb|DV021371.1|DV021371
EST:     GAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|16925475|gb|BM078543.1|BM078543
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60401116|gb|DN233923.1|DN233923
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76933825|gb|DV173601.1|DV173601
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|22542675|gb|BU093113.1|BU093113
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60400384|gb|DN233191.1|DN233191
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|22818940|gb|BU499030.1|BU499030
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149085100|gb|EE174607.2|EE174607
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|91871701|gb|EB401658.1|EB401658
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|78087633|gb|DV516026.1|DV516026
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60399390|gb|DN232204.1|DN232204
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|31357365|gb|CD441722.1|CD441722
EST:     GTCATGTGACCCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|4887485|gb|AI677584.1|AI677584
EST:     CATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: CATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|8665682|gb|BE186498.1|BE186498
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60357925|gb|DN224898.1|DN224898
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|78026618|gb|DV495005.1|DV495005
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|67020859|gb|CO449608.1|CO449608
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76013539|gb|DT940709.1|DT940709
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60343978|gb|DN210951.1|DN210951
EST:     GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC                         GAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 247

GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 244

GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 213

GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 202

GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCgtgagtgtct ... tgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttttttatgtcgctttatggaaaattatgtggatattgaatgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG
                  tttatggaaaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgtcttgttaagacaatttgttgtttcaactgtgcttgttatctttttttatgtcgctttatggaaaattatgtggatattgaatgctttgcagGAAGGTGGCGGGGAGCCGCCTCATGGGAAACTTGGCTGGGCCATCGATGAGGATTTTGGTTCGTTTGAGGCACTTGTAAAGAAGATGAATGCAGAAGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG