1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtgacggacgctaccgatgcagctaggaatgcagagcatggagttccagcctagccatttcccccatacacagcgagcttgcactcagagttgatatatatgcttgctgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGCTGGTCCAGACGTTTGGGCAGAAGAACCATGTCTGCCTCAGGGAAGGCT
species | Zea mays |
transcript | GRMZM2G059845_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|91876209|gb|EB406166.1|EB406166
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|211437112|gb|FL416893.1|FL416893
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAATGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|88756465|gb|DY540606.1|DY540606
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|76011529|gb|DT938699.1|DT938699
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|211215552|gb|FL199927.1|FL199927
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG TAAGAGAAG-CCATCCAGCGAGGTGTCCTEST: gi|149099210|gb|EE185237.2|EE185237
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCT
EST: AACATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|78114761|gb|DV533149.1|DV533149
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|71434936|gb|DR815986.1|DR815986
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|94479511|gb|EB708469.1|EB708469
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|78074303|gb|DV502737.1|DV502737
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|148944961|gb|EC890130.2|EC890130
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|71432339|gb|DR813389.1|DR813389
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|93284342|gb|EB676606.1|EB676606
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGEST: gi|71313729|gb|DR793454.1|DR793454
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACG
EST: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAG GAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTA
genomic: ACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacg ... tgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTA
cccatacacagcgagcttgcactcagagttgatatatatgcttgctgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGCTGGTCCAGACGTTTGGGCAGAAGAACCATGTCTGCCTCAGGGAAGGCT
agttgat putative branch site (score: 199)
ttgatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgacggacgctaccgatgcagctaggaatgcagagcatggagttccagcctagccatttcccccatacacagcgagcttgcactcagagttgatatatatgcttgctgctgtccagGAAGAGAAGGCCATCCAGCGAGGTGTCCTCCCGGTGCTGCGCCGCGCTACGCTGGTCCAGACGTTTGGGCAGAAGAACCATGTCTGCCTCAGGGAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC