Sequence
atgc intronic sequence ATGC exonic sequence...aattttggcatattttaaccagattttattttgtttatgttgcagctgtcaattttggtagatgtagacggtccgttattgacttttttccctggtgcagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGACTCCCTCTTGAATGGACTATCATCCATCTCTGTTTCTTCACCATTGCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 3'ss of exon 4
aattttggcatattttaaccagattttattttgttt---atgttgcagctgtcaattttggtagatgtagacggtccgttattgactt-----ttttccctggtg-cagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGACTCCCTCTTGAATGGACTATCATCCATCTCTGTTTCTTCACCATTGCGC
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--------tttatttttccagttttctatgttcttttacactctccagttttcaatgttgaaata-gcatctaatcacttcttgacttctattttatttttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGACTCCCTCTTAAATGGGCTCTCATCCATTTCAGTTTCTTCACCATTGCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88757723|gb|DY541864.1|DY541864EST: TGCAAAGCTGGTGCTGCCACTTCTTGCTTGGTGCGCTTTGGTCATGACAG GGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGA
genomic: TGCAAAGCTGGTGCTGCCACTTCTTGCTTGGTGCGCTTTGGTCATGACAGgttgtatcct ... cctggtgcagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtcaattttggtagatgtagacggtccgttattgacttttttccctggtgcagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGACTCCCTCTTGAATGGACTATCATCCATCTCTGTTTCTTCACCATTGCGC
tattgac putative branch site (score: 2)
ttgacttttttccct CT-rich tract
ttattgactttttt TA-rich tract