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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattttggcatattttaaccagattttattttgtttatgttgcagctgtcaattttggtagatgtagacggtccgttattgacttttttccctggtgcagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGACTCCCTCTTGAATGGACTATCATCCATCTCTGTTTCTTCACCATTGCGC

Basic information

species Zea mays
transcript GRMZM2G059671_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 3'ss of exon 4
aattttggcatattttaaccagattttattttgttt---atgttgcagctgtcaattttggtagatgtagacggtccgttattgactt-----ttttccctggtg-cagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGACTCCCTCTTGAATGGACTATCATCCATCTCTGTTTCTTCACCATTGCGC
          ||||||  |    || ||| || |||   |   | ||| | ||||| |||  | | | |     ||  || |||||||     || |   ||||  |||||||| ||| |||||||| || |||||||| || |||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||
--------tttatttttccagttttctatgttcttttacactctccagttttcaatgttgaaata-gcatctaatcacttcttgacttctattttatttttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGACTCCCTCTTAAATGGGCTCTCATCCATTTCAGTTTCTTCACCATTGCGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757723|gb|DY541864.1|DY541864
EST:     TGCAAAGCTGGTGCTGCCACTTCTTGCTTGGTGCGCTTTGGTCATGACAG                         GGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGA
genomic: TGCAAAGCTGGTGCTGCCACTTCTTGCTTGGTGCGCTTTGGTCATGACAGgttgtatcct ... cctggtgcagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtcaattttggtagatgtagacggtccgttattgacttttttccctggtgcagGGAATGTCTAATTGATTTAATTGGGAACCCGGGATTCTTATCTGAACCTGACTCCCTCTTGAATGGACTATCATCCATCTCTGTTTCTTCACCATTGCGC
                               tattgac  putative branch site (score: 2)
                                 ttgacttttttccct  CT-rich tract
                              ttattgactttttt  TA-rich tract