1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatatatactcacacttttccagtttaattattctagacttttcgctgctgatgacctgtctcggtttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACAA
species | Zea mays |
transcript | GRMZM2G059580_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|31356573|gb|CD440930.1|CD440930
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|19822159|gb|BQ048183.1|BQ048183
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTGTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGC-TGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATAGAACEST: gi|40337134|gb|CK371204.1|CK371204
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: TTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|31356567|gb|CD440924.1|CD440924
genomic: TTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|22935604|gb|BU571879.1|BU571879
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|31351288|gb|CD435645.1|CD435645
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|26455900|gb|CA827483.1|CA827483
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACEST: gi|67012465|gb|CO441214.1|CO441214
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
EST: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATG TTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
genomic: GGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATTGCGCGCTATGgtatatatac ... ttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAAC
agtttaattattctagacttttcgctgctgatgacctgtctcggtttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACAA
tgctgat putative branch site (score: 3)
tctcggtttcctttc putative PPT
aattattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatactcacacttttccagtttaattattctagacttttcgctgctgatgacctgtctcggtttcctttcagTTGCTCGCTTGAAGGATGACAACCCTCTTTTCGGGTCTTCCCGTATTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG