1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagtagtgtagccacttagcacaagctcatgaatttttcttccacatgggatgggaataccttgtaccctgagctgaggtatatcgtgcttctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTTCTGCACCTGCATTAGCCTCGGGAGTGTCGGGCTTGTTCTATCAATCGCT
species | Zea mays |
transcript | GRMZM2G059252_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCAC ATTCGAGGGCACAATGATACCAAAACAGAGGCCAGGCGGCGEST: gi|211239457|gb|FL329556.1|FL329556
genomic: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCACgtaagttgcg ... tctgaaccagATTCGAGGGCACAATGATACCAAA-CAGAGGCCAGGCGGCG
EST: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCAC ATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTTEST: gi|211061088|gb|FL320228.1|FL320228
genomic: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCACgtaagttgcg ... tctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTT
EST: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCAC ATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAEST: gi|6270022|gb|AW157993.1|AW157993
genomic: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCACgtaagttgcg ... tctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTA
EST: ACCGCGGGGAGGTCATCAC ATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTTEST: gi|60359339|gb|DN226312.1|DN226312
genomic: ACCGCGGGGAGGTCATCACgtaagttgcg ... tctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTT
EST: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCAC ATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTT
genomic: TTCTTCACTCGCAATAACTTCACCGTCTCAGACCGCGGGGAGGTCATCACgtaagttgcg ... tctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTT
atgggatgggaataccttgtaccctgagctgaggtatatcgtgcttctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTTCTGCACCTGCATTAGCCTCGGGAGTGTCGGGCTTGTTCTATCAATCGCT
tgcttct CT-rich tract
tatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtagtgtagccacttagcacaagctcatgaatttttcttccacatgggatgggaataccttgtaccctgagctgaggtatatcgtgcttctgaaccagATTCGAGGGCACAATGATACCAAACAGAGGCCAGGCGGCGCTGCTAACCTTCTGCACCTGCATTAGCCTCGGGAGTGTCGGGCTTGTTCTATCAATCGCT
- - - -gtagcca
- - - - - - - - -agcacaa
- - - - - - - - - - - - gctcatg
- - - - - - - - - - - - - - - - - - - - - cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgtgct