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...tttgcatacaattgagtagacagtgaaagagtttgacggttttgaaggctttcctgaaacaattattgtctttgactttgtttggtgtgcgttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGGCCCAGCTGGGATCATGAAGTGCAAGTATGTAGAACTCACTTCAGACTT
species | Zea mays |
transcript | GRMZM2G059151_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211362770|gb|FL362322.1|FL362322
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211458486|gb|FL255599.1|FL255599
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|149083748|gb|EE173108.2|EE173108
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|148953762|gb|EC899129.2|EC899129
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211336175|gb|FL255583.1|FL255583
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTAEST: gi|211336169|gb|FL255577.1|FL255577
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTA
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAATGCATCACCTTGTATGGATTTAANGGAGEST: gi|211458479|gb|FL255592.1|FL255592
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211458477|gb|FL255590.1|FL255590
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211334013|gb|FL255572.1|FL255572
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211336171|gb|FL255579.1|FL255579
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|5268364|gb|AI770328.1|AI770328
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211462254|gb|FL324872.1|FL324872
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211179440|gb|FL364368.1|FL364368
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211540563|gb|FL329390.1|FL329390
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGNCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211336168|gb|FL255576.1|FL255576
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|149083929|gb|EE173306.2|EE173306
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211187935|gb|FL314087.1|FL314087
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211336179|gb|FL255587.1|FL255587
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATEST: gi|211458484|gb|FL255597.1|FL255597
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTAT
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211523118|gb|FL350158.1|FL350158
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211414893|gb|FL345683.1|FL345683
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211458480|gb|FL255593.1|FL255593
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211336170|gb|FL255578.1|FL255578
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211458364|gb|FL364597.1|FL364597
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|149103124|gb|EE288493.2|EE288493
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|20803238|gb|BQ294288.1|BQ294288
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|31354738|gb|CD439095.1|CD439095
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|148963458|gb|EE014477.2|EE014477
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|211334009|gb|FL255568.1|FL255568
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGEST: gi|149105648|gb|EE291200.2|EE291200
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
EST: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTG ACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
genomic: CTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgc ... gttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAG
aggctttcctgaaacaattattgtctttgactttgtttggtgtgcgttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGGCCCAGCTGGGATCATGAAGTGCAAGTATGTAGAACTCACTTCAGACTT
ctttgac putative branch site (score: 369)
aaacaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcatacaattgagtagacagtgaaagagtttgacggttttgaaggctttcctgaaacaattattgtctttgactttgtttggtgtgcgttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGGCCCAGCTGGGATCATGAAGTGCAAGTATGTAGAACTCACTTCAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg