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...tttatttactcactaagtacagtgcaattaggattatttacccatgtgtctaatatggttttccatgttatgttaattgttctactctactttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTTAAGGAGCAGATGTCAAAAGCTGACATAACAGCCTCTCCTACACAACTAAATGGAACTC
species | Zea mays |
transcript | GRMZM2G058910_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAG ATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGNNNNNNNAAGGAGCAEST: gi|211511210|gb|FL158323.1|FL158323
genomic: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAGgtacataccc ... tttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTT-AAGGAGCA
EST: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAG ATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGNNNNNNNAAGGAGCAEST: gi|211188745|gb|FL459412.1|FL459412
genomic: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAGgtacataccc ... tttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTT-AAGGAGCA
EST: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAG ATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGNNNNNNNAAGGAGCAEST: gi|211511213|gb|FL158326.1|FL158326
genomic: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAGgtacataccc ... tttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTT-AAGGAGCA
EST: CTTAATATAGATNAGAGCCCGTTTCAACGGACATATGCTGCCCAG ATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGNNNNNNNAAGGAGCA
genomic: CTTAATATAGATAAGAGCCCGTTTCAACGGACATATGCTGCCCAGgtacataccc ... tttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTT-AAGGAGCA
gtgtctaatatggttttccatgttatgttaattgttctactctactttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTTAAGGAGCAGATGTCAAAAGCTGACATAACAGCCTCTCCTACACAACTAAATGGAACTC
tgttaat putative branch site (score: 188)
ttctactctactttct putative PPT
atgttatgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatttactcactaagtacagtgcaattaggattatttacccatgtgtctaatatggttttccatgttatgttaattgttctactctactttcttacagATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTTAAGGAGCAGATGTCAAAAGCTGACATAACAGCCTCTCCTACACAACTAAATGGAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - -cagtgca
- - - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtta