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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcttttgctttctaaggtttgttggactctgtttcatggaatcacacattgcttcctgattttcagGGTTAACTCCCATTGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCGACACCGAAGTTAGCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATC

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774596|gb|DR972474.1|DR972474
EST:     GATTGGCTTCAGTTCGGGGCTCCGCTTTTGCTCCAACAGAGTCCTCAGAG                         GGTTAACTCCCATTGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCG
genomic: GATTGGCTTCAGTTCGGGGCTCCGCTTTTGCTCCAACAGAGTCCTCAGAGgtatatcttt ... tgattttcagGGTTAACTCCCATTGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCG
EST: gi|50325710|gb|CO520836.1|CO520836
EST:     TGGCTTCAGTTCGGGGCTCCGCTTTTGCTCCAACAGAGTCCTCAGAG                         GGTTAACTCCCATTGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCG
genomic: TGGCTTCAGTTCGGGGCTCCGCTTTTGCTCCAACAGAGTCCTCAGAGgtatatcttt ... tgattttcagGGTTAACTCCCATTGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaggtttgttggactctgtttcatggaatcacacattgcttcctgattttcagGGTTAACTCCCATTGGCGCGATGAAGTCGTATAGGCTATCGGAGCTCAGCGACACCGAAGTTAGCGGCCTCAAAGCTCGTCCCCGCATCGATTTCTCATC
                                          tcctgat  putative branch site (score: 3)
                                     ttgcttcct  CT-rich tract
                                             tgatttt  TA-rich tract