1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttgtggtggaatctttattagaacccgaaaaatgatctcttcccatgtatctttgatgccttgtgtttccttaagtaatatagtctttatcaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCCGTGGGAAGTCGGTGGTTTGTGAGGCAGTAATCAAGGAAGAAGTTGTGAA
species | Zea mays |
transcript | GRMZM2G058095_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGACTACCTCCAGGCCGACTTCCCTGACATGGATGTCATCAGCATATCAG GTATCTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCCEST: gi|76282281|gb|DV021849.1|DV021849
genomic: GGACTACCTCCAGGCCGACTTCCCTGACATGGATGTCATCAGCATATCAGgttttcccat ... atcaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCC
EST: GGACTACCTCCAGGCCGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCCEST: gi|211218899|gb|FL464210.1|FL464210
genomic: GGACTACCTCCAGGCCGACTTCCCTGACATGGATGTCATCAGCATATCAGgttttcccat ... atcaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCC
EST: GGACTACCTCCAGGCCGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCC
genomic: GGACTACCTCCAGGCCGACTTCCCTGACATGGATGTCATCAGCATATCAGgttttcccat ... atcaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCC
catgtatctttgatgccttgtgtttccttaagtaatatagtctttatcaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCCGTGGGAAGTCGGTGGTTTGTGAGGCAGTAATCAAGGAAGAAGTTGTGAA
ctttgat putative branch site (score: 5)
tctttatc putative PPT
ttaagtaatatagtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtggtggaatctttattagaacccgaaaaatgatctcttcccatgtatctttgatgccttgtgtttccttaagtaatatagtctttatcaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATTGATGGCCGTGGGAAGTCGGTGGTTTGTGAGGCAGTAATCAAGGAAGAAGTTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -tgtggtg
- - - - - - - - - - - - - - gaaaaatg
- - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - -tttgatg