1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattgtttccgcttttggctttcctgtttgcttctgggcatcaatgagtgctcatgtgcacgtttgcttgtactactaatcatatccactttagttacaatgatcacgtaattctgtcaatgtttctctccggttttccagtagttgcctgaaaaatatgtgcacgcttcaccatttcagGCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCCATAAGTCTATGGTGGATCAGAAATGTGATTTATCAGAGTTGTGTTCTCA
species | Zea mays |
transcript | GRMZM2G057618_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCGGCGGAAGCATCATACTCCTCGTCGTCATCCCGGCACAGAGCTCTG GCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCCEST: gi|149008715|gb|EE040910.2|EE040910
genomic: GCCCGGCGGAAGCATCATACTCCTCGTCGTCATCCCGGCACAGAGCTCTGgtattgtttc ... accatttcagGCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCC
EST: GCCCGGCGGAAGCATCATACTCCTCGTCGTCATCCCGGCACAGAGCTCTG GCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCC
genomic: GCCCGGCGGAAGCATCATACTCCTCGTCGTCATCCCGGCACAGAGCTCTGgtattgtttc ... accatttcagGCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCC
ctctccggttttccagtagttgcctgaaaaatatgtgcacgcttcaccatttcagGCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCCATAAGTCTATGGTGGATCAGAAATGTGATTTATCAGAGTTGTGTTCTCA
cttcacc CT-rich tract
tgaaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtttccgcttttggctttcctgtttgcttctgggcatcaatgagtgctcatgtgcacgtttgcttgtactactaatcatatccactttagttacaatgatcacgtaattctgtcaatgtttctctccggttttccagtagttgcctgaaaaatatgtgcacgcttcaccatttcagGCAGAAAATTCTGGGGTTTTCCACTGTTTGCCGGAGACTGTGCAAGTGGCCATAAGTCTATGGTGGATCAGAAATGTGATTTATCAGAGTTGTGTTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA