1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttttggatattcagtttttcgtgttggtagttgtgtgcatctttgttcaaagtcttaaaatcaacagctggatctgcccaaggagcagCAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAGGAGGGTTGGGTTCAGCAGATTTTGGAAGTACTCTTGGTGCCAGTGGTGG
species | Zea mays |
transcript | GRMZM2G057158_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTCCAGCTCCAAATACTAATCCACTTCCGAATCCTTGGGGTCCAAATG CAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAGEST: gi|8665519|gb|BE186335.1|BE186335
genomic: GGCTCCAGCTCCAAATACTAATCCACTTCCGAATCCTTGGGGTCCAAATGgtaagttttg ... caaggagcagCAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAG
EST: GGCTCCAGCTCCAAATACTAATCCACTTCCGAATCCTTGGGGTCCAAATG CAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAG
genomic: GGCTCCAGCTCCAAATACTAATCCACTTCCGAATCCTTGGGGTCCAAATGgtaagttttg ... caaggagcagCAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAG
tgtgcatctttgttcaaagtcttaaaatcaacagctggatctgcccaaggagcagCAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAGGAGGGTTGGGTTCAGCAGATTTTGGAAGTACTCTTGGTGCCAGTGGTGG
tctgccc CT-rich tract
ttaaaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttggatattcagtttttcgtgttggtagttgtgtgcatctttgttcaaagtcttaaaatcaacagctggatctgcccaaggagcagCAAGATCCCCTCCTGCTACCAACACTAGGAGTACTACAGCAGGTGGCCCAGGAGGGTTGGGTTCAGCAGATTTTGGAAGTACTCTTGGTGCCAGTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG