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...tactttcagtgatcttctgtctgtgagttcttgagattgtattgaaagtacggaaccattttctccatctgattattgcttttgttctttccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGATTAGAAGAGGAGTTTGAGGGCCTTGTTGACCTTGTAGAAATGAAGGCTT
species | Zea mays |
transcript | GRMZM2G056393_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAG GCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGAEST: gi|67019503|gb|CO448252.1|CO448252
genomic: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAGgttagcatga ... ccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGA
EST: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAG GCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGAEST: gi|19436218|gb|BM952628.1|BM952628
genomic: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAGgttagcatga ... ccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGA
EST: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAG GCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGAEST: gi|87154041|gb|DY398830.1|DY398830
genomic: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAGgttagcatga ... ccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGA
EST: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAG GCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGAEST: gi|31353864|gb|CD438221.1|CD438221
genomic: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAGgttagcatga ... ccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGA
EST: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAG GCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGA
genomic: TTAACAAGTTGGACCGTATGGGAGCTGATCCATGGAAGGTTCTTAACCAGgttagcatga ... ccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGA
aagtacggaaccattttctccatctgattattgcttttgttctttccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGATTAGAAGAGGAGTTTGAGGGCCTTGTTGACCTTGTAGAAATGAAGGCTT
atctgat putative branch site (score: 4)
ttgcttttgttctttc putative PPT
tgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactttcagtgatcttctgtctgtgagttcttgagattgtattgaaagtacggaaccattttctccatctgattattgcttttgttctttccatgttaagGCGCGATCCAAGCTCCGTCACCACAATGCAGCTGTACAAGTACCCATAGGATTAGAAGAGGAGTTTGAGGGCCTTGTTGACCTTGTAGAAATGAAGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG