1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgctagggggatgaatgcatatggtgtgtcgaatgcttatttaatcatctcataattctgaaggaaaatagtccgcataacaatatgtttctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAGTTCAGATGTGCCTTCCCCACCGTCGCATACTGCTGTAGGAGGTCAAGC
species | Zea mays |
transcript | GRMZM2G056078_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGEST: gi|211523857|gb|FL149373.1|FL149373
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGG
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAEST: gi|211523863|gb|FL149379.1|FL149379
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAEST: gi|116820025|gb|EC863204.1|EC863204
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAEST: gi|44681853|gb|CK786901.1|CK786901
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAEST: gi|32802862|gb|CD955098.1|CD955098
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAEST: gi|211523849|gb|FL149365.1|FL149365
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAEST: gi|211526858|gb|FL149380.1|FL149380
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAEST: gi|211523854|gb|FL149370.1|FL149370
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TSCCSTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAMAATTACCGCTTTAEST: gi|5499310|gb|AI855177.1|AI855177
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
EST: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGG GGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
genomic: TGCCGTCGCAACCCGCAGATCAGCACGCGACCCTCATGTCCCGGTTGGgtaagaacca ... tctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTA
tcatctcataattctgaaggaaaatagtccgcataacaatatgtttctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAGTTCAGATGTGCCTTCCCCACCGTCGCATACTGCTGTAGGAGGTCAAGC
gcataac putative branch site (score: 350)
tgtttctttc putative PPT
ataacaatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctagggggatgaatgcatatggtgtgtcgaatgcttatttaatcatctcataattctgaaggaaaatagtccgcataacaatatgtttctttcatagGGGCTAAAGCAGAGGCACCATCTTCTGGAGGGATTAAAAATTACCGCTTTAGTTCAGATGTGCCTTCCCCACCGTCGCATACTGCTGTAGGAGGTCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-tgctagg
- - - - - - tgaatgc
- - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - -atgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata