1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtccctgatgattagtcaagtccaattctattttagacaggggctgttgccctgaaaacatgattgaaactttttgtttctaatatactcttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACAATCAGGTGGACAGTGAGAGCAACATGTTTGATGGAAATGAGGGGTCAGA
species | Zea mays |
transcript | GRMZM2G055243_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAATGC-TTACAG GTGCATCTCCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGAEST: gi|15100569|gb|BI396360.1|BI396360
genomic: GCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAA-GCCTTACAGgtagctgaag ... cttcctgcagGTGCATCTCC-TGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGA
EST: GGGAGCTCGAACAAACTTTACAAAGCCTTACAG GTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACAEST: gi|211275553|gb|FL192919.1|FL192919
genomic: GGGAGCTCGAACAAACTTTACAAAGCCTTACAGgtagctgaag ... cttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACA
EST: AGCAGKCATGGCTTGTTGGGAGCTCSAACAAACTTTACAAAGCCTTACAG GTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACAEST: gi|211317872|gb|FL083590.1|FL083590
genomic: AGCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAAGCCTTACAGgtagctgaag ... cttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACA
EST: AGCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAAGCCTTACAG GTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACEST: gi|149109130|gb|EE293152.2|EE293152
genomic: AGCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAAGCCTTACAGgtagctgaag ... cttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGAC
EST: AGCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAAGCCTTACAG GTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACA
genomic: AGCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAAGCCTTACAGgtagctgaag ... cttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACA
tgttgccctgaaaacatgattgaaactttttgtttctaatatactcttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACAATCAGGTGGACAGTGAGAGCAACATGTTTGATGGAAATGAGGGGTCAGA
ttctaat putative branch site (score: 84)
tactcttcct CT-rich tract
aaactttttgtttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtccctgatgattagtcaagtccaattctattttagacaggggctgttgccctgaaaacatgattgaaactttttgtttctaatatactcttcctgcagGTGCATCTCCTGGTGAGGGCACTGGGGCAACTATGTCTGACGATGAAGACAATCAGGTGGACAGTGAGAGCAACATGTTTGATGGAAATGAGGGGTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - cctgatg
- - - - - - - - - - - - - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - ccctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt