1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acttatccattgaagatgagaatttcatttaggggtttctttgggtgtttcattttttgtattcttattggcttggtccttaaaacactcttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACAAGGCCTCTGGCAATTTGTGTTGGTGATGTCTCAGACATATCACGGTTT
species | Zea mays |
transcript | GRMZM2G055217_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211369407|gb|FK962488.1|FK962488
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|91875462|gb|EB405419.1|EB405419
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211366759|gb|FK962485.1|FK962485
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|18661405|gb|BM501260.1|BM501260
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: CTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211369418|gb|FK962499.1|FK962499
genomic: CTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211369410|gb|FK962491.1|FK962491
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211369409|gb|FK962490.1|FK962490
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211369414|gb|FK962495.1|FK962495
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211186408|gb|FL462665.1|FL462665
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: TGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|89761447|gb|DY689458.1|DY689458
genomic: TGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACEST: gi|211369411|gb|FK962492.1|FK962492
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAAC
EST: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATG CTCTGCAGGAGCAGTT
genomic: GTGATTGCGGTGCCTACTGATACCATATACGGGTTTGCATGTGATGCATGgttcgtgttt ... ttcatgacagCTCTGCAGGAGCAGTT
tgtttcattttttgtattcttattggcttggtccttaaaacactcttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACAAGGCCTCTGGCAATTTGTGTTGGTGATGTCTCAGACATATCACGGTTT
cactcttc CT-rich tract
attttttgtattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttatccattgaagatgagaatttcatttaggggtttctttgggtgtttcattttttgtattcttattggcttggtccttaaaacactcttcatgacagCTCTGCAGGAGCAGTTAATCGTATTTATGAGATCAAAGGACGCATACAAACAAGGCCTCTGGCAATTTGTGTTGGTGATGTCTCAGACATATCACGGTTT
- - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacact