1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgaaaacagtgcagattcttcttcttcttctgatgacttttgatgtgtgcgtgcatctttcagtgagaaacagacgcacatatttatttgtttggtgaagGTTTGAGCAGGAACAGATGAAGGAGCACGCTCTGCATTTGCTTGTACTCTCCCACGTCTTCTCGGTGCCGTCTCTGAAGACGGTCTGCGTCGACCAACTC
species | Zea mays |
transcript | GRMZM2G055175_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tgtgcgtgcatctttcagtgagaaacagacgcacatatttatttgtttggtgaagGTTTGAGCAGGAACAGATGAAGGAGCACGCTCTGCATTTGCTTGTACTCTCCCACGTCTTCTCGGTGCCGTCTCTGAAGACGGTCTGCGTCGACCAACTC
tttgttt CT-rich tract
acatatttatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaacagtgcagattcttcttcttcttctgatgacttttgatgtgtgcgtgcatctttcagtgagaaacagacgcacatatttatttgtttggtgaagGTTTGAGCAGGAACAGATGAAGGAGCACGCTCTGCATTTGCTTGTACTCTCCCACGTCTTCTCGGTGCCGTCTCTGAAGACGGTCTGCGTCGACCAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-gaaaacag
- - - - -tgcagat
- - - - - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - gtgcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacata