1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgccacttatatttttttgcgggcaaattgccagctactgactggcttctaatgataaagtttttgaaaaatcttccttttccaattcttttttctagAGTAGTGATGCTGAGGAAGGTAAGTCCAAGAAGGGTCAATATGAAGGGCCAGATATGGACTTAGCTGCAATGCTTGAAAGGGATGTTCTGGATTCTACTC
species | Zea mays |
transcript | GRMZM2G054715_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGTTCTGTAAGGAAAGGAAAACCAAGTTCAAGCAAGGCTGATTCAGCG AGTAGTGATGCTGAGGAAGGTAAGTCCAA-AAGGGGTCAATATGAAAGGGCEST: gi|71448165|gb|DR829215.1|DR829215
genomic: ACAGTTCTGTAAGGAAAGGAAAACCAAGTTCAAGCAAGGCTGATTCAGCGgtaatttcta ... ttttttctagAGTAGTGATGCTGAGGAAGGTAAGTCCAAGAAGGG-TCAATATGAA-GGGC
EST: ACAGTTCTGTAAGGAAAGGAAAACCAAGTTCAAGCAAGGCTGATTCAGCG AGTAGTGATGCTGAGGAAGGTAAGTCCAAGAAGGGTCAATATGAGGGGCCA
genomic: ACAGTTCTGTAAGGAAAGGAAAACCAAGTTCAAGCAAGGCTGATTCAGCGgtaatttcta ... ttttttctagAGTAGTGATGCTGAGGAAGGTAAGTCCAAGAAGGGTCAATATGAAGGGCCA
ggcttctaatgataaagtttttgaaaaatcttccttttccaattcttttttctagAGTAGTGATGCTGAGGAAGGTAAGTCCAAGAAGGGTCAATATGAAGGGCCAGATATGGACTTAGCTGCAATGCTTGAAAGGGATGTTCTGGATTCTACTC
ttctaat putative branch site (score: 30)
tcttccttttccaatt putative PPT
taatgataaagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgccacttatatttttttgcgggcaaattgccagctactgactggcttctaatgataaagtttttgaaaaatcttccttttccaattcttttttctagAGTAGTGATGCTGAGGAAGGTAAGTCCAAGAAGGGTCAATATGAAGGGCCAGATATGGACTTAGCTGCAATGCTTGAAAGGGATGTTCTGGATTCTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC