1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagatcttgcttcccatttgtgttggaatggagtgattgctcgagaaagtaagagatgtatgtaatagtgcttgaacttgttacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGGTTCCCAAGCTGTTTGAGAG
species | Zea mays |
transcript | GRMZM2G054706_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|211331853|gb|FL370139.1|FL370139
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|74236590|gb|DT644504.1|DT644504
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|88752193|gb|DY536334.1|DY536334
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|71326892|gb|DR800103.1|DR800103
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|76931669|gb|DV172797.1|DV172797
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|89757721|gb|DY687204.1|DY687204
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|88752231|gb|DY536372.1|DY536372
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|50324552|gb|CO519678.1|CO519678
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|211447325|gb|FL371185.1|FL371185
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAWAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|93015545|gb|EB641065.1|EB641065
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|60399511|gb|DN232323.1|DN232323
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|211042074|gb|FL383254.1|FL383254
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|71769763|gb|DR967700.1|DR967700
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|18654773|gb|BM499578.1|BM499578
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|93015602|gb|EB641122.1|EB641122
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|211434257|gb|FL404589.1|FL404589
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|71436328|gb|DR817378.1|DR817378
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|76923536|gb|DV169535.1|DV169535
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|71428269|gb|DR809319.1|DR809319
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|37418625|gb|CF646983.1|CF646983
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|211301339|gb|FL414902.1|FL414902
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|149044689|gb|EE047662.2|EE047662
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|76283964|gb|DV023532.1|DV023532
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|93013386|gb|EB638906.1|EB638906
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|21390005|gb|BQ528054.1|BQ528054
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|78081498|gb|DV509910.1|DV509910
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGEST: gi|211217744|gb|FL411417.1|FL411417
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
EST: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAG AATGCGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
genomic: TGGAACTGGCGCAGCTGCTCGACGTTTACGATCATCTCTACCCCGGAAAGgtgagatctt ... tacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTG
ttgctcgagaaagtaagagatgtatgtaatagtgcttgaacttgttacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGGTTCCCAAGCTGTTTGAGAG
ttacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatcttgcttcccatttgtgttggaatggagtgattgctcgagaaagtaagagatgtatgtaatagtgcttgaacttgttacattttagAATGAGGAAAGTGGTCAAGAAGTTGCCCAAGTGGATCCACAGGAGCTCGTGGTTCCCAAGCTGTTTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT