1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgatttgcgttgcttgcttcgtctggtttcctcccagcttggatctcgcaatgtgatgcagtgttgctgctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTTGTCGCCGAGTACA
species | Zea mays |
transcript | GRMZM2G054634_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTC GCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCEST: gi|211341381|gb|FL170566.1|FL170566
genomic: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTCgtatgatttg ... gctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
EST: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTC GCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGEST: gi|71426767|gb|DR807817.1|DR807817
genomic: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTCgtatgatttg ... gctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCG
EST: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTC GCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCEST: gi|211341383|gb|FL170568.1|FL170568
genomic: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTCgtatgatttg ... gctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
EST: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTC GCGGAGGCG-CGGGCGTTGGGAAGGTGCGGGCACAAGCGEST: gi|211343761|gb|FL170570.1|FL170570
genomic: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTCgtatgatttg ... gctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGG-CACAAGCG
EST: CCGTYAAGCGCTTCTCGCGCCTCTCCTGGCCTGACC-GCAGCAGTTCCTC GCGGANGCGGCGGGCGTTGGGAAGGTGCGEST: gi|71426768|gb|DR807818.1|DR807818
genomic: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTCgtatgatttg ... gctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCG
EST: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTC GCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
genomic: CCGTCAAGCGCTTCTCGCGCCTCTCCTGGCCTGACCCGCAGCAGTTCCTCgtatgatttg ... gctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatttgcgttgcttgcttcgtctggtttcctcccagcttggatctcgcaatgtgatgcagtgttgctgctgttgcagGCGGAGGCGGCGGGCGTTGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTTGTCGCCGAGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT