1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctgtatgaactagtcgtttgaaaattgaaatgttgagcttactaactgccagttttggcatcatttgaatatttacagtaacgtatctcatgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG
species | Zea mays |
transcript | GRMZM2G054247_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCAEST: gi|16379595|gb|BI993037.1|BI993037
genomic: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
EST: CGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCAEST: gi|91873253|gb|EB403210.1|EB403210
genomic: CGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
EST: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCAEST: gi|87153735|gb|DY398524.1|DY398524
genomic: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
EST: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCAEST: gi|22490544|gb|BU050467.1|BU050467
genomic: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
EST: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCAEST: gi|71427965|gb|DR809015.1|DR809015
genomic: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
EST: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCAEST: gi|94476642|gb|EB705600.1|EB705600
genomic: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
EST: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG GAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
genomic: CGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtacgctttt ... atgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCA
actgccagttttggcatcatttgaatatttacagtaacgtatctcatgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG
atcatttgaatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtatgaactagtcgtttgaaaattgaaatgttgagcttactaactgccagttttggcatcatttgaatatttacagtaacgtatctcatgattccagGAGATTAGAACGGTGGAGCTTGCAAAGCCAGTTGGATGGGTCCACATATCATTATCCGGGATTGATCCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG