1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacttgcgttttttattggactgaggtatcaaataaacatgctatttcttcttggtcttccttgcttagtttgctgataaaccttttgtatcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGGTAAACTTTGGGATGACTTATTTCTTGATCCATGACTCTTGC
species | Zea mays |
transcript | GRMZM2G054136_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT GCGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCTEST: gi|22521636|gb|BU080447.1|BU080447
genomic: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgttt ... tcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCT
EST: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT ACGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCT
genomic: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgttt ... tcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCT
ttcttcttggtcttccttgcttagtttgctgataaaccttttgtatcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGGTAAACTTTGGGATGACTTATTTCTTGATCCATGACTCTTGC
tgctgat putative branch site (score: 1206)
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttgcgttttttattggactgaggtatcaaataaacatgctatttcttcttggtcttccttgcttagtttgctgataaaccttttgtatcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGGTAAACTTTGGGATGACTTATTTCTTGATCCATGACTCTTGC
tacttgc
- - - - - - - - tggactg
- - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - -catgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat