Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagacgcccgccgcccgcgcgtgacgcacggtgcacagtgcaagtgggtggctgactgactggtcgcgtccgtgtgtggtgtggtgtgtgtgtgtgggcgcgcagGGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCTGGCTCCACACCGGCGACATCGGCTACGTCGACGACGACGACGAGGTCTT

Basic information

species Zea mays
transcript GRMZM2G054013_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054013_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g46970.1 (Oryza sativa), 3'ss of exon 2
gtaaagagacgcccgccgcccgcgcgtgacgcacggtgcacagtgcaagtgggtggctgactgactggtcgcgtccgtgtgtggtgtggtgtgtgtgtgtgg-gcgcgcagGGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCTGGCTCCACACCGGCGACATCGGCTACGTCGACGACGACGACGAGGTCTT
           |       |  |  |   | | |   | | ||||  | | | | || | |   |  ||   | |     |||    |||     |   |    || ||||| ||||||||||| || ||||| |||||   ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||
----------actatgtatctac-tggaccacccccagtaaagtgttaatagctcgccggcaagcatgtgatgacaagaggtgtctcggtaataattaataacacgtgcagGTTACCTGAACGATCCCGAGGCGACCGCCGCGACGATCGACGTCGAGGGGTGGCTGCACACCGGCGACATCGGCTACGTCGACGACGACGACGAGGTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105640|gb|EE291190.2|EE291190
EST:     CCGCAACCTCCCCGGCGAGATCTGCATCCGGGGCCCGCAGATCATGAAAG                         GGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCT
genomic: CCGCAACCTCCCCGGCGAGATCTGCATCCGGGGCCCGCAGATCATGAAAGgtaaagagac ... gggcgcgcagGGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCT
EST: gi|71327258|gb|DR800256.1|DR800256
EST:     CCGCAACCTCCCCGGCGAGATCTGCATCCGGGGCCCGCAGATCATGAAAG                         GGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCT
genomic: CCGCAACCTCCCCGGCGAGATCTGCATCCGGGGCCCGCAGATCATGAAAGgtaaagagac ... gggcgcgcagGGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgactgactggtcgcgtccgtgtgtggtgtggtgtgtgtgtgtgggcgcgcagGGTACCTGAACGACCCGGAGGCCACCGCGAGGACGATCGACGTCCACGGCTGGCTCCACACCGGCGACATCGGCTACGTCGACGACGACGACGAGGTCTT
   gactgac  putative branch site (score: 2)