1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgggttttttctatccccgctatctcttgcttgcctgtttaatcatctctgtagtttgtattggatcagtagtaggattgctttatgttgaattctcaacgaagcatttgatcaaggatacactgaaaattttggactgttgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAGATGGACCCAAGAGACCCTTTCAGAATCCAGATGACAGACTTGATTCTC
species | Zea mays |
transcript | GRMZM2G053767_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCTCGTCACACAGCGCTACCGCNTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|9952730|gb|BE639193.1|BE639193
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|31611944|gb|CD568566.1|CD568566
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: CGCTCGTCACACAGCGCTACCGCCTCGGGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|211245447|gb|FK950835.1|FK950835
genomic: CGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTMATGGTGCAAA-GCTCGTTAACEST: gi|211245443|gb|FK950831.1|FK950831
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAAC
EST: CTCGTCACACAGCGCTACCGCCTTCGTGGGAGAGGGACGAACTACAAGAA AEST: gi|211245443|gb|FK950831.1|FK950831
genomic: CTCGTCACACAGCGCTACCGCCT-CGTGG-AGAGGGACGA-CTACAAGAAgtgggttttt ... tgggtggcag-
EST: CTCGTCACACAGCGCTACCGCCTTCGTGGGAGAGGGACGAACTACAAGAA AEST: gi|211245442|gb|FK950830.1|FK950830
genomic: CTCGTCACACAGCGCTACCGCCT-CGTGG-AGAGGGACGA-CTACAAGAAgtgggttttt ... tgggtggcag-
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
tcaacgaagcatttgatcaaggatacactgaaaattttggactgttgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAGATGGACCCAAGAGACCCTTTCAGAATCCAGATGACAGACTTGATTCTC
atttgat putative branch site (score: 5)
tgaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttttttctatccccgctatctcttgcttgcctgtttaatcatctctgtagtttgtattggatcagtagtaggattgctttatgttgaattctcaacgaagcatttgatcaaggatacactgaaaattttggactgttgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAGATGGACCCAAGAGACCCTTTCAGAATCCAGATGACAGACTTGATTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG