1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcatccttgattggttgctcagttgacccgaaccgtccttccttttcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC
species | Zea mays |
transcript | GRMZM2G053764_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|5895766|gb|AW037012.1|AW037012
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|6022600|gb|AW067412.1|AW067412
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|5713918|gb|AI943903.1|AI943903
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|5895785|gb|AW037031.1|AW037031
genomic: GATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|60355446|gb|DN222419.1|DN222419
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|5649980|gb|AI920340.1|AI920340
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: TCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|71328419|gb|DR800850.1|DR800850
genomic: TCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|87156694|gb|DY401483.1|DY401483
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|5895786|gb|AW037032.1|AW037032
genomic: GGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|5917370|gb|AW054161.1|AW054161
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|22715330|gb|BU197707.1|BU197707
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATEST: gi|211363205|gb|FL271919.1|FL271919
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
tcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC
aaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatccttgattggttgctcagttgacccgaaccgtccttccttttcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC
- - - - - -tggttgc
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