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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatccttgattggttgctcagttgacccgaaccgtccttccttttcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC

Basic information

species Zea mays
transcript GRMZM2G053764_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053764_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G46940.1 (Glycine max), 3'ss of exon 2
----tcatccttgattggttgctcagttgacccgaaccgt----ccttccttttcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC-
     |    |||||    |  ||| |    | | | | |    | | | |||||| |  || ||| | |      |  |    ||   ||    ||   ||||| ||||   || || || ||||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| ||||| ||||||||||| |||||||| 
ttgtcctgttttgatatccttttcaatatttctgtatcatgtaccttcctttttcaatagtattttttta------tccgtttgatggcttttggct---tttggcaggTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCA

upper sequence: GRMZM2G053764_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G39370.1 (Glycine max), 3'ss of exon 1
tcatc--cttgattggttgctcagttgacccgaaccgtccttccttttcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC
|  |    |||    |||      |       ||   | ||   || |    | |  ||| |||   |  |||    |     ||  |      ||||| ||||   || || || ||||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| || || ||||||||||| ||||||||
ttgttgttttgtcctgttttgagatctttatcaatatttctgtattatgcaccttcctttttcaatagtctttttttatctgtttgatggct--tttggcagGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961920|gb|CN844629.1|CN844629
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|5713918|gb|AI943903.1|AI943903
EST:     GATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|5649980|gb|AI920340.1|AI920340
EST:     TCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: TCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|5895766|gb|AW037012.1|AW037012
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|60355507|gb|DN222480.1|DN222480
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|5917370|gb|AW054161.1|AW054161
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|87156694|gb|DY401483.1|DY401483
EST:     GGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|6022600|gb|AW067412.1|AW067412
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|22715330|gb|BU197707.1|BU197707
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|12968800|gb|BG265836.1|BG265836
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
EST: gi|26559585|gb|CA831820.1|CA831820
EST:     GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAA                         GTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT
genomic: GAACGATGGGATGCAGGAATTCTTCGTCGAATTCAAGGGGCCGGCCGAAAgtaatagccc ... aatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtcatagtttatcacaggattttgccaaataaattcgtactcaatttggtagGTATCTACCAAGGCGGTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC
                             aaataaatt  TA-rich tract