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...aatatttaatagtcaatttacaaattagctactggtagtactttggtgtgtctccagtacctattcctaaggtaaaatctggttttgtgttcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAAGAACTTGCGTTGTGTCCATAGTAATTTTCAAGGGAGAAATATTCCAGA
species | Zea mays |
transcript | GRMZM2G053531_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCCACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAEST: gi|6227143|gb|AW155672.1|AW155672
genomic: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAGgtaattcttc ... tcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAA
EST: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAEST: gi|76926083|gb|DV170714.1|DV170714
genomic: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAGgtaattcttc ... tcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAA
EST: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAEST: gi|93281145|gb|EB673409.1|EB673409
genomic: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAGgtaattcttc ... tcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAA
EST: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAEST: gi|93016890|gb|EB642410.1|EB642410
genomic: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAGgtaattcttc ... tcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAA
EST: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAA
genomic: CTCTAGCGAGAGTGATGAAGACTATGTTAATTCTACTGTGCTAGAAGCAGgtaattcttc ... tcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAA
gtgtgtctccagtacctattcctaaggtaaaatctggttttgtgttcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAAGAACTTGCGTTGTGTCCATAGTAATTTTCAAGGGAGAAATATTCCAGA
ttttgtgttcttttcc CT-rich tract
taaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatttaatagtcaatttacaaattagctactggtagtactttggtgtgtctccagtacctattcctaaggtaaaatctggttttgtgttcttttccagTTGAGGTGAGAAGTGGATCAGAAGGATATGTGATAAAGATGCGAGATGGAAAGAACTTGCGTTGTGTCCATAGTAATTTTCAAGGGAGAAATATTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - -tggtgtg