Sequence
atgc intronic sequence ATGC exonic sequence...ctgatgccaccttgaagtacctgcatgccaattattactgtagaaagtcaatagtgtttccaggtccgggctttactaatagtgaacagggtctttgcagGCAGTTAATCTCAGAAGTACAGAAGTTTCAAGCATTCCACGCATAAAGGTGAGCAGAAAAGAAATTCTACACTCACTGTGTCACAGCTTTGAATTTTGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G053298_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g37710.1 (Oryza sativa), 3'ss of exon 2
--------------------------------------------------------------------------------------------ctgatgccaccttgaagtacctgcatgccaattattactgtagaaagtcaatagtgtttccagg--tccgggctttactaatagtgaacagggtctttgcagGCAGTTAATCTCAGAAGTACAGAAGTTTCAAGCATTCCACGCATAAAGGTGAGCAGAAAAGAAATTCTACACTCACTGTGTCACAGCTTTGAATTTTGGG
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gtatgagcatcacttactctgaaaagttcaaaaaagaaatcttgttgtaagtatctgaccaagaaataaacttggttgcacaagaaagagcacgtatggtttcaccaag-acatgatgactattgattacagtaggaagtaactgaatattttaggcatatggactttcttaatgctaat---gctctttgcagGCAGTTAACCTGACAAGCACAGAAGTTTCAAGCATTCCGCGCGCAAAG---------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtcaatagtgtttccaggtccgggctttactaatagtgaacagggtctttgcagGCAGTTAATCTCAGAAGTACAGAAGTTTCAAGCATTCCACGCATAAAGGTGAGCAGAAAAGAAATTCTACACTCACTGTGTCACAGCTTTGAATTTTGGG
tactaat putative branch site (score: 1)
tctttgc putative PPT
tttactaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgatgccaccttgaagtacctgcatgccaattattactgtagaaagtcaatagtgtttccaggtccgggctttactaatagtgaacagggtctttgcagGCAGTTAATCTCAGAAGTACAGAAGTTTCAAGCATTCCACGCATAAAGGTGAGCAGAAAAGAAATTCTACACTCACTGTGTCACAGCTTTGAATTTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA