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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcaacaagacggtaactttagttcccagttactacttgtgctagtaaagtaattaagattcagttctcccgtcctatacatctcctatgtcctaaccgatgctattgtattcctcgtgtgcagGCAACTTGCTTGCTACACTGGCCCAACAG

Basic information

species Zea mays
transcript GRMZM2G053004_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937004|gb|DV174997.1|DV174997
EST:     AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGA                         GCAACTTGCTTGCTACACTGGCCCAACAG
genomic: AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGAgtaagtgtca ... tcgtgtgcagGCAACTTGCTTGCTACACTGGCCCAACAG
EST: gi|76011413|gb|DT938583.1|DT938583
EST:     AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGA                         GCAACTTGCTTGCTACACTGGCCCAACAG
genomic: AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGAgtaagtgtca ... tcgtgtgcagGCAACTTGCTTGCTACACTGGCCCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtcctatacatctcctatgtcctaaccgatgctattgtattcctcgtgtgcagGCAACTTGCTTGCTACACTGGCCCAACAG
                     tcctaac  putative branch site (score: 1)
                                       tattcctc  putative PPT
                                  tattgtatt  TA-rich tract