1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatagataaaaaaaatctaaactgtgaaaacaattgtttcagaaatcattttgctttagttttcacacaaagtgcattttggttgctcatttttttccagGACATTGACATTACTAAGGAGTATGGAAATTACAGCAGTTCAACACGGCAGTCCCTTGAAGCTTGGTCTGCTGCTGAACTAGATTTGAGCCTT
species | Zea mays |
transcript | GRMZM2G052798_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tcattttgctttagttttcacacaaagtgcattttggttgctcatttttttccagGACATTGACATTACTAAGGAGTATGGAAATTACAGCAGTTCAACACGGCAGTCCCTTGAAGCTTGGTCTGCTGCTGAACTAGATTTGAGCCTT
ttgctcatttttttcc CT-rich tract
tcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagataaaaaaaatctaaactgtgaaaacaattgtttcagaaatcattttgctttagttttcacacaaagtgcattttggttgctcatttttttccagGACATTGACATTACTAAGGAGTATGGAAATTACAGCAGTTCAACACGGCAGTCCCTTGAAGCTTGGTCTGCTGCTGAACTAGATTTGAGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -aaaaaaa
- - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc