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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctgctggactgctggtggagaagaaagatttgatcttgatgccggattctggttccgtctttgatttgggcggtgctgactccctgttgctgtttcttggccttggttgtggtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG

Basic information

species Zea mays
transcript GRMZM2G052713_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052713_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 3'ss of exon 2
gtgagcctgctggactgctggtggagaagaaagatttgatcttgatgccg-gattctggttccgtctttgatttgggcggtgctgactccctgttgctgtttcttggccttggttgtggtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
                                    |||    ||| | |  |    | |||| |||| |   |||        || |    | || |   ||| || |||   |    ||    |||||||||||||| |||||||||||||| |||||||||||||||||||| |||
-----------------------------------gtgagggggatccagcaaaggagattccatcttggcgctggtt-----cgatttgtgggtgtt-catctgggtcttttct----tggtcgcagGTGCATCGGCTGGTGGTCAACCGGGATCCCAAGTTCACCAACTTCGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344147|gb|FL188317.1|FL188317
EST:     AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG                         GTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACMAACTTCGTCGAG
genomic: AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAGgtgagcctgc ... gtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
EST: gi|211344138|gb|FL188308.1|FL188308
EST:     AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG                         GTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
genomic: AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAGgtgagcctgc ... gtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
EST: gi|211341751|gb|FL188301.1|FL188301
EST:     AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG                         GTGGNTCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
genomic: AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAGgtgagcctgc ... gtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
EST: gi|211341749|gb|FL188299.1|FL188299
EST:     AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG                         GTGCATCGGCTCGTGATCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
genomic: AGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAGgtgagcctgc ... gtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggcggtgctgactccctgttgctgtttcttggccttggttgtggtgaatccagGTGCATCGGCTCGTGGTCAACCGGGACCCCAAGTTCACCAACTTCGTCGAG
       tgctgac  putative branch site (score: 2)